View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_14 (Length: 422)
Name: NF2655_high_14
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 14743798 - 14743411
Alignment:
| Q |
16 |
atcgtaagcaagaggtttggcctgacgaaagcggaagtatccggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagaga |
115 |
Q |
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| T |
14743798 |
atcgtaagcaagaggtttggcctgacgaaagcggaagtatctggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagaga |
14743699 |
T |
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| Q |
116 |
taaaacgcctcctcgaagaagaggttaatcgtttcttcgctcccttcaaatccctcttacatctcttttttcctgctctcgctgaatgcgnnnnnnnngt |
215 |
Q |
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| T |
14743698 |
taaaacgcctcctggaagaagaggttaatcgtttcttcgctcccttcaaatccctcttacatctcttttttcctgctctcgctgaatgcgaaaaaaa-gt |
14743600 |
T |
|
| Q |
216 |
tggcaacatcgatgacaccgttgaattttacttcaatctcatcttcttctctgttggtggttcgtacttccctatctctcacttttccatccaaatatat |
315 |
Q |
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| T |
14743599 |
tggcaacatcgatgacaccgttgaattttacttcaatctcatcttcttctctgttggtggttcgtacttccctatctctcacttttccatccaaatatat |
14743500 |
T |
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| Q |
316 |
tattattcttcatctcattcgtaaattatttaggtgtattttccctctttggcttctatgtcatatcaattgccctagcaagacgctgc |
404 |
Q |
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| T |
14743499 |
tattattcttcatctcattcgtaaattatttaggtgtattttccctctttggcttctatgtcatatcaattgccctagcaagacgctgc |
14743411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 14746723 - 14746601
Alignment:
| Q |
16 |
atcgtaagcaagaggtttggcctgacgaaagcggaagtatccggcctgactatcgaggagaaggctcgcctgatcaaatcaaccttctccgaagcagaga |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
14746723 |
atcgtaagcaagaggtttggcctgacgaaagcggaggtatccggcctgaccatcgaggagaaggcttgcctgatcaaatcaaccttctctgaagcagaga |
14746624 |
T |
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| Q |
116 |
taaaacgcctcctcgaagaagag |
138 |
Q |
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| | |||||| ||||||||||| |
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| T |
14746623 |
ttactcgcctcatcgaagaagag |
14746601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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