View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_22 (Length: 342)
Name: NF2655_high_22
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 32560875 - 32561185
Alignment:
| Q |
10 |
aagaatatcgcagcattcaatgatagttgattttgagcaggttgatataagaaactgaacaccttttttctattgctatgtacaaatacagaattaggaa |
109 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560875 |
aagaatatcgcagcatt----gatagttgattttgagcaggttgatataagaaactgaacaccttttttctattgctatgtacaaatacagaattaggaa |
32560970 |
T |
|
| Q |
110 |
caaagcacaaaatttgttacaatgaaagcttatatgctgggctatatcaacaaggtcattttggaatttctttaaaaacggggaatgaaaactcgtacac |
209 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32560971 |
caaagcacaaaatttgttgcaatgaaagcttatatgctgggctatatcaacaaggtcattttggaatttctttaaaaacggggaatgaaaactcgtacac |
32561070 |
T |
|
| Q |
210 |
tgaattcgagcagtctcctcatcacgatcaagtgcatccccttgtatgttttgttgggaaaagggtgacttatcacctaatagcctggtgcaagtacaag |
309 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32561071 |
tgaattggagcagtctcctcatcacgatcaagtgcatccccttgtatgttttgttgggaaaagggtgacttatcacctaatagcctggtgcaagtacaag |
32561170 |
T |
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| Q |
310 |
agttcaggtcatttc |
324 |
Q |
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||||||||||||||| |
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| T |
32561171 |
agttcaggtcatttc |
32561185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 20367012 - 20366900
Alignment:
| Q |
196 |
gaaaactcgtacactgaattcgagcagtctcctcatcacgatcaagtgcatccccttgtatgttttgttgggaaaagggtgacttatcacctaatagcct |
295 |
Q |
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|||| ||| |||| ||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
20367012 |
gaaacctcttacattgaattcgagccgtctcctcatcccgatcaagggcatccccttgtaagttttgttgagagaagggtgacttatcacctaatagcct |
20366913 |
T |
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| Q |
296 |
ggtgcaagtacaa |
308 |
Q |
| |
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| T |
20366912 |
gttgcaagtacaa |
20366900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 20409365 - 20409262
Alignment:
| Q |
205 |
tacactgaattcgagcagtctcctcatcacgatcaagtgcatccccttgtatgttttgttgggaaaagggtgacttatcacctaatagcctggtgcaagt |
304 |
Q |
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|||| ||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
20409365 |
tacattgaattcgagctgtctcctcgtcacggtcaagggcatccccttgtaagttttgttgagaaaagggtgacttatcacctaatagcctgttgtaagt |
20409266 |
T |
|
| Q |
305 |
acaa |
308 |
Q |
| |
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|||| |
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| T |
20409265 |
acaa |
20409262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 5306415 - 5306303
Alignment:
| Q |
196 |
gaaaactcgtacactgaattcgagcagtctcctcatcacgatcaagtgcatccccttgtatgttttgttgggaaaagggtgacttatcacctaatagcct |
295 |
Q |
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|||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||| |
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| T |
5306415 |
gaaaactcttacattgaattcgagccgtctcctcgtcacggtcaagggcatccccttgtaagttttgttgagagaagggtgacttatcacctaatagcct |
5306316 |
T |
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| Q |
296 |
ggtgcaagtacaa |
308 |
Q |
| |
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| T |
5306315 |
gttgcaagtacaa |
5306303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 5306948 - 5306909
Alignment:
| Q |
31 |
gatagttgattttgagcaggttgatataagaaactgaaca |
70 |
Q |
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||||||||||||||||||| |||||| ||||||||||||| |
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| T |
5306948 |
gatagttgattttgagcagcttgatacaagaaactgaaca |
5306909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 308
Target Start/End: Complemental strand, 17842102 - 17841999
Alignment:
| Q |
205 |
tacactgaattcgagcagtctcctcatcacgatcaagtgcatccccttgtatgttttgttgggaaaagggtgacttatcacctaatagcctggtgcaagt |
304 |
Q |
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|||| ||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||| || |||| |
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| T |
17842102 |
tacattgaattcgagctgtctcctcgtcacggtcaagggcatccccttgtaagttttgttgagaaaaaggtgacttatcacctaataacctgttgtaagt |
17842003 |
T |
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| Q |
305 |
acaa |
308 |
Q |
| |
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|||| |
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| T |
17842002 |
acaa |
17841999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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