View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_30 (Length: 301)
Name: NF2655_high_30
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 28008571 - 28008835
Alignment:
| Q |
12 |
gcataggtattggtaactgcctccaacttcccctgaattttctgaacccacaatgaaatcagttttatatatcatagctgtaatctctcaacaacactct |
111 |
Q |
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| T |
28008571 |
gcataggtattggtaactgcctccaacttcccctgaattttctgaacccacaatgaaatcagttttatatatcatagctgtattctctcaacaacactct |
28008670 |
T |
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| Q |
112 |
acnnnnnnnacacttctttttctcatttctctctcaaaataaagtcatacgcagtcnnnnnnnncccttcaannnnnnnnnnnnaaaccctcaaacctag |
211 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
28008671 |
ac---ttttacacttctttttctcatttctctctcaaaataaagtcatacgcagtctttttttccccttcaa--tctctctctcaaaccctcaaacctag |
28008765 |
T |
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| Q |
212 |
caaagatttcttctctagaagatttcttaattctagcacactgtctctctcaggtttctctttctatcta |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28008766 |
caaagatttcttctctagaagatttcttaattctagcacactgtctctctcaggtttctctttctatcta |
28008835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 26428324 - 26428234
Alignment:
| Q |
64 |
atgaaatcagttttatatatcatagctgtaatctct-caacaacactctacnnnnnnnacacttctttttctcatttctctctcaaaataaagtcat |
159 |
Q |
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|||||||||||||||||| |||||||||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26428324 |
atgaaatcagttttatat--catagctgtactctcaacaacaacactgtacttt----acacttctttttctcatttctctctcaaaataaagtcat |
26428234 |
T |
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