View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_33 (Length: 293)
Name: NF2655_high_33
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 51728934 - 51729207
Alignment:
| Q |
5 |
caggctacgaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcagcttccaccttagtgttatct |
104 |
Q |
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| T |
51728934 |
caggctacaaaaaggctctggtaaaatggttttgatctttttctttccattaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatct |
51729033 |
T |
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| Q |
105 |
tcaaattcaattccttcattacaaaaccaccactttgatgctttttcaaagagaattttgcctttttccacctctgagaagaaattttctggcatgatag |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51729034 |
tcaaattcgattccttcattacaaaaccaccactttgatgcttttttaagtagaattttgcctttttccacctctgagaagaaattttctggcattatag |
51729133 |
T |
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| Q |
205 |
ccatttgacatgatgcataatcctccgcaaaagggtgttctggttttaatccgtacttctccaatggaagtttc |
278 |
Q |
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| T |
51729134 |
ccatttgacatgatgcataatcctccgcaaaagggtgttctggttttaaatcatacttctccaatggaaatttc |
51729207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 19056871 - 19056607
Alignment:
| Q |
14 |
aaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcagcttccaccttagtgttatcttcaaattca |
113 |
Q |
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| T |
19056871 |
aaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattttagtgttgtcatcaaattca |
19056772 |
T |
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| Q |
114 |
attccttcattacaaaaccaccactttgatgctttttcaaagagaattttgcctttttccacctctgagaagaaattttctggcatgatagccatttgac |
213 |
Q |
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| T |
19056771 |
attcctccattccaaaaacaccactttgatgctcttttgaagattattttacctttatcagcctcattgaaaaaactttctggtgttatagctatttgac |
19056672 |
T |
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| Q |
214 |
atgatgcataatcctccgcaaaagggtgttctggttttaatccgtacttctccaatggaagtttc |
278 |
Q |
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| T |
19056671 |
aagatgcaaaatcttcctcaaaagggtgttctggtttcaacccatacttctctaatggaagtttc |
19056607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 19188328 - 19188592
Alignment:
| Q |
14 |
aaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcagcttccaccttagtgttatcttcaaattca |
113 |
Q |
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| T |
19188328 |
aaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattttagtgttgtcatcaaattca |
19188427 |
T |
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| Q |
114 |
attccttcattacaaaaccaccactttgatgctttttcaaagagaattttgcctttttccacctctgagaagaaattttctggcatgatagccatttgac |
213 |
Q |
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| T |
19188428 |
attcctccattccaaaaacaccactttgatgctcttttgaagattattttacctttatcagcctcattgaaaaaactttctggtgttatagctatttgac |
19188527 |
T |
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| Q |
214 |
atgatgcataatcctccgcaaaagggtgttctggttttaatccgtacttctccaatggaagtttc |
278 |
Q |
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| T |
19188528 |
aagatgcaaaatcttcctcaaaagggtgttctggtttcaacccatacttctctaatggaagtttc |
19188592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 278
Target Start/End: Original strand, 6895500 - 6895765
Alignment:
| Q |
14 |
aaaaggctctggtaaaatggttttgatctttttcttt-ccatcaaaaccagttgcaaggatcactacatcagcttccaccttagtgttatcttcaaattc |
112 |
Q |
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|||||||||||| |||| ||||||| ||| || || |||||| |||| |||||||| | || |||||||| |||| |||||||| || |||||||| |
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| T |
6895500 |
aaaaggctctggcaaaagtgttttgagcttctttttggccatcataaccggttgcaagaagaacaacatcagcatccattttagtgttgtcatcaaattc |
6895599 |
T |
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| Q |
113 |
aattccttcattacaaaaccaccactttgatgctttttcaaagagaattttgcctttttccacctctgagaagaaattttctggcatgatagccatttga |
212 |
Q |
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||| || | | | ||||||||||||||||||||| ||| || | ||||| ||||| || |||| | | ||| ||| ||| | | ||| | |||| |
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| T |
6895600 |
aataccattactccaaaaccaccactttgatgctcttttgaatattattttccctttatcagcctcattgtaaaaactttttggtagtacagctacttga |
6895699 |
T |
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| Q |
213 |
catgatgcataatcctccgcaaaagggtgttctggttttaatccgtacttctccaatggaagtttc |
278 |
Q |
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| T |
6895700 |
caagatgcataatcctcctcaaatgagtgatctggcttcaatccatatttctctaatggaagtttc |
6895765 |
T |
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