View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_38 (Length: 248)
Name: NF2655_high_38
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 42896063 - 42896291
Alignment:
| Q |
5 |
tgtccaacaatatcacattacattcaattaaatcattttatccatttttcatcggtgtcaccgtatcgatgtatatgtatcgtctagtgtctgtgtcagc |
104 |
Q |
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| T |
42896063 |
tgtccaacactggcacattacattcaattaaatcattttatccatttttcatcggtgtcaccgcatcgatgtatatgtatcgtctagtgtctgtgtcagc |
42896162 |
T |
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| Q |
105 |
aggatggtttgttgtttgaggattgtagtttcagtttcatgtttgatgatatgttttttcaccatgcatcgagtttatctttttcacatcgcatctatgc |
204 |
Q |
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| T |
42896163 |
aggatggtttgttgtttgaggattgtagtttcagtttcatgtttgatgatatgttttttcaccatgcatcgagtttatctttttcacatcgcatctatgc |
42896262 |
T |
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| Q |
205 |
ggatatacagcttatttgttgtccttatt |
233 |
Q |
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| T |
42896263 |
ggatatacagcttatttgttgtccttatt |
42896291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 28897738 - 28897813
Alignment:
| Q |
159 |
tttttcaccatgcatcgagttt-atctttttcacatcgcatctatgcggatatacagcttatttgttgtccttatt |
233 |
Q |
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|||||||| ||||||| ||||| | ||||||||||| |||||||||||||||| |||||||||||||| |||||| |
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| T |
28897738 |
tttttcacaatgcatcaagttttaagtttttcacatctcatctatgcggatatatagcttatttgttgttcttatt |
28897813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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