View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_39 (Length: 247)
Name: NF2655_high_39
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 1959399 - 1959630
Alignment:
| Q |
1 |
ctttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttagaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1959399 |
ctttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttaccgttcatcatctctattgctatccttcagattttgattttagaca |
1959498 |
T |
|
| Q |
101 |
tagaaatggtctatcattttgactttgaaggaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtct |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1959499 |
tagaaatggtctatcattttgactttgaagaaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagattggtcgaattgggaatcggtct |
1959598 |
T |
|
| Q |
201 |
tacctataatcaggcaaaacatgaggttcaca |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1959599 |
tacctataatcaggcaaaacatgaggttcaca |
1959630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2024113 - 2023902
Alignment:
| Q |
1 |
ctttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttagaca |
100 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2024113 |
ctttggttgacattttctctatctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattttaaaca |
2024014 |
T |
|
| Q |
101 |
tagaaatggtctatcattttgactttgaa-ggaagaataaggcgtcctatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtc |
199 |
Q |
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|||||||| |||| |||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| | ||||||||| ||| |
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| T |
2024013 |
tagaaatgatctaccattttgattttgaagggaagaataaggtgtcctatgcaaacaagtagtcaaaactatactagatcagtcaagttgggaatcagtc |
2023914 |
T |
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| Q |
200 |
ttacctataatc |
211 |
Q |
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| T |
2023913 |
tgccctataatc |
2023902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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