View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_40 (Length: 245)
Name: NF2655_high_40
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_40 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 245
Target Start/End: Complemental strand, 22339026 - 22338802
Alignment:
| Q |
21 |
ccaggtttaattctctttactcctttttaatataaattcatcttcaaaagcgcttgtgcttagcattcctcttcatcaaaagcatgtttagagtattatt |
120 |
Q |
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| T |
22339026 |
ccaggtttaattctctttactcctttttaatataaattcatcttcaaaagcgcttgtgcttagcattcctcttcatcaaaagcatgtttagagtattatt |
22338927 |
T |
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| Q |
121 |
ttacattgcttgagtagtcttcatttagtctggaatgtgatgactctggtaccaatgatacattaatgaattgtattttatataattgaaacgagaagta |
220 |
Q |
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| T |
22338926 |
ttacattgcttgagtagttttcatttagtctggaatgtgatgactgtggtaccaatgatacattaatgaattgtatgttatataattgaaacaagatgta |
22338827 |
T |
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| Q |
221 |
tacttttagtacgaaaattctactt |
245 |
Q |
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| T |
22338826 |
tacttttagtacgaaaattctactt |
22338802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 23120854 - 23120786
Alignment:
| Q |
171 |
accaatgatacattaatgaattgtattttatataattgaaacgagaagtatacttttagtacgaaaatt |
239 |
Q |
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| T |
23120854 |
accaatgttactctaataaattttatgttatataattgaaacgagaagtatatttttagttcgaaaatt |
23120786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 25411998 - 25411927
Alignment:
| Q |
170 |
taccaatgatacattaatgaattgtattttatataattgaaacgagaagtatacttttagtacgaaaattct |
241 |
Q |
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| T |
25411998 |
taccaatgatgctttaatagattgtaggttatataattgaaacgagaagtatattttcagtccaaaaattct |
25411927 |
T |
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