View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_41 (Length: 245)
Name: NF2655_high_41
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 35964689 - 35964897
Alignment:
| Q |
21 |
cacattcacacatgtgaagatttcagttcagaattatatgctaaaaaagaataagaaagaaaaatatacatttaagattatgacaccaatttatgcacac |
120 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35964689 |
cacattcacacatgtgaagatttcggttcagaattatatgctaaaaaagaataagaaagaaaaatatacatttaagattatgacaccaatttatgcacac |
35964788 |
T |
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| Q |
121 |
aattagcaacattttagttacaaaaccctcag-gnnnnnnncatgctaaaagtcattcttaaaataggcaaaaagcaatctttttcatctctttttgtag |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35964789 |
aattagcaacattttagttacaaaaccctcagaaaaaaaaacatgctaaaagtcattcttaaaataggcaaaaagcaatctttttcatctcttttagtag |
35964888 |
T |
|
| Q |
220 |
aaagaaaag |
228 |
Q |
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||||||||| |
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| T |
35964889 |
aaagaaaag |
35964897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 35964491 - 35964549
Alignment:
| Q |
21 |
cacattcacacatgtgaagatttcagttcagaattatatgctaaaaaagaataagaaagaa |
81 |
Q |
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|||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
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| T |
35964491 |
cacattcaaacatgtgaagattccagttcagaat--tatgctaaaaaagaacaagaaagaa |
35964549 |
T |
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