View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_42 (Length: 242)
Name: NF2655_high_42
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28008913 - 28009137
Alignment:
| Q |
1 |
ttttcttgcagattttgnnnnnnngttaacatgggagcacttagcacatactttaactataattgttacccttatcaacctattcaaactactaccaaca |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| | |||| |
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| T |
28008913 |
ttttcttgcagattttgtttttttgttaacatgggagcacttagcacatacttcaattataattgttacccttatcaacctactcaaactaccaataaca |
28009012 |
T |
|
| Q |
101 |
actcagaaatcaccacttttcaacatgatgaacaagaacaaaaccactatttcaatgaagcttctcttttagatgaaagcttcatttttcaaacttaccc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28009013 |
actcagaaatcaccacttttcaacatcatgaacaagaacaaaaccactatttcaatgaagcttctcttttagatgaaagcttcatttttcaaacttaccc |
28009112 |
T |
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| Q |
201 |
ttgtcaagatcaacaactacttgtt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
28009113 |
ttgtcaagatcaacaactacttgtt |
28009137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 26427983 - 26427870
Alignment:
| Q |
25 |
gttaacatgggagcacttagcacatactttaactataattgttacccttatcaacctattcaaactactaccaacaactcagaaatcaccacttttcaac |
124 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
26427983 |
gttaacatgggagcacttagcacatacttcaactataattgttatccttatcaacctattcaaa---ctaccaacaactcagaaatcactacttttcaac |
26427887 |
T |
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| Q |
125 |
atgatgaacaagaacaa |
141 |
Q |
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|| |||||||||||||| |
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| T |
26427886 |
atcatgaacaagaacaa |
26427870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 26427838 - 26427789
Alignment:
| Q |
146 |
actatttcaatgaagcttctcttttagatgaaagcttcatttttcaaact |
195 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26427838 |
actatttgaatgaaacttctcttttagatgaaagcttcatttttcaaact |
26427789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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