View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_high_5 (Length: 505)
Name: NF2655_high_5
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 17180618 - 17180189
Alignment:
| Q |
1 |
aattaattaatttaaattaaaatttgaatgttgnnnnnnngtttaatgtgaaatcaaaagggtgttaatctgtcacaatattttatgagttatttaattc |
100 |
Q |
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| T |
17180618 |
aattaattaatttaaattaaaatttgaatgttgtttttttgtttaatgtgaaatcaaaagggtgttaatctgtcacaatattttatgagttatttaattg |
17180519 |
T |
|
| Q |
101 |
aaagccttgttttg-aaaagtttaaattaatgtataaaatagattttatctaatagaaattttatgatcaacttaaatccgttgcatctactttatggtg |
199 |
Q |
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| T |
17180518 |
aaagccttgttttggaaaagtttaaattcatgtataaaatagattttatctaatagaaattttatgatcaacttgaatccgttgcatctactttatggtg |
17180419 |
T |
|
| Q |
200 |
caaccgatataaagaccattaatcataaagagat--aaatgtttttcttttgattaaaatctttaccgatgttgcaccattgagcagtgacatccgttct |
297 |
Q |
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|||||| | ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17180418 |
caaccgttgtaaagaccattaatcttaaagagataaaaaaaaaattcttttgattaaaatctttaccgatgttgcaccattgagcagtgacatccgttct |
17180319 |
T |
|
| Q |
298 |
ttatctttgtcgagtttaannnnnnncatatgaa-gaataaagggctagtcacnnnnnnnnnnnnnnnnngaattacctaagttgattaatatatatata |
396 |
Q |
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|||| |||||||||||||| |||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
17180318 |
ttatttttgtcgagtttaatttttttcatatgaatgaataaagggctagtcactttctttttccttttttgaattacctaatttgatta--atatatata |
17180221 |
T |
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| Q |
397 |
aagttcatgcaactttgagtgaagttatcatg |
428 |
Q |
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| T |
17180220 |
aagttcatgcaactttgagtgaagttatcatg |
17180189 |
T |
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