View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2655_high_6 (Length: 503)
Name: NF2655_high_6
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 486
Target Start/End: Original strand, 51689341 - 51689827
Alignment:
| Q |
11 |
cagagaggataaacaatgacgttagcaccgacacttacgattgaagcttctcacgcgtgtccatacgaacgaacacacgtgattacattcaattatttca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
51689341 |
cagagaggataaacaatgacgttagcaccgacacttatgattgaagcttctcacgcgtgtccatacgaaggaacacacgtgattacattcaattatttca |
51689440 |
T |
|
| Q |
111 |
tgtccggtgtcaatgtg-----------tctggtgtttgtgcttcatagaattgaagtaacttacggtgctagaaatgtgaagaccgggttcagcagatt |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51689441 |
tgtccggtgtcaatgtgtcagtattgtgtctggtgtttgtgcttcatagaattgaagtaacttacggtgctagaaatgtgaagaccgggttcagcagatt |
51689540 |
T |
|
| Q |
200 |
caaagagaaagctaggagcatctctttcatcttctttaaccaaacaccgataagcaagaaccggagtgaggtgatcggaaaatatgcaacggtacagagg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51689541 |
caaagagaaagctaggagcatctctttcatcttctttaaccaaacaccgataagcaagaaccggagtgaggtgatcggaaaatatgcaacggtacagagg |
51689640 |
T |
|
| Q |
300 |
aatcacgttccctttcttcgaagcttctataaatttatctgcattatcaactagaggaagagattgagcggcgcatttgatcggacggtagctagagttc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51689641 |
aatcacgttccctttcttcgaagcttctataaatttatctgcattatcaactagaggaagggattgagcggcgcatttgatcggacggtagctagagttc |
51689740 |
T |
|
| Q |
400 |
catctggatctggaaacagagatggttgggaacgatacacttgccattgataaagcttccatcatcgccgttcagcgacgcaagagt |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
51689741 |
catctggatctggaaacagagatggttgggaacgatacacttgccattgataaagcttccatcatcaccgttcagcgacgcaagagt |
51689827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University