View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2655_high_8 (Length: 473)

Name: NF2655_high_8
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2655_high_8
NF2655_high_8
[»] chr5 (8 HSPs)
chr5 (1-463)||(36489208-36489668)
chr5 (313-411)||(17065318-17065415)
chr5 (324-384)||(28682843-28682903)
chr5 (317-396)||(10720806-10720886)
chr5 (313-391)||(38302551-38302632)
chr5 (324-384)||(21877985-21878045)
chr5 (324-367)||(3040732-3040773)
chr5 (313-353)||(17764845-17764885)
[»] chr2 (8 HSPs)
chr2 (313-420)||(24440027-24440134)
chr2 (316-463)||(28948796-28948942)
chr2 (317-463)||(40926468-40926611)
chr2 (313-460)||(30418898-30419046)
chr2 (328-463)||(17151232-17151366)
chr2 (324-385)||(17679799-17679861)
chr2 (313-462)||(32234434-32234583)
chr2 (324-384)||(9892221-9892282)
[»] chr4 (10 HSPs)
chr4 (313-463)||(25219575-25219724)
chr4 (318-463)||(44453087-44453232)
chr4 (317-463)||(23795388-23795533)
chr4 (313-362)||(8656195-8656245)
chr4 (317-371)||(41068774-41068828)
chr4 (324-372)||(21180119-21180165)
chr4 (327-384)||(34511995-34512052)
chr4 (387-463)||(13336945-13337021)
chr4 (316-364)||(22391676-22391724)
chr4 (315-398)||(33040645-33040728)
[»] chr1 (18 HSPs)
chr1 (313-463)||(31893033-31893184)
chr1 (313-463)||(19100207-19100355)
chr1 (318-458)||(32943677-32943816)
chr1 (313-463)||(3833433-3833586)
chr1 (317-397)||(28015922-28016002)
chr1 (318-452)||(12629267-12629401)
chr1 (330-397)||(41574370-41574437)
chr1 (326-397)||(43021808-43021879)
chr1 (317-395)||(34879990-34880067)
chr1 (318-397)||(34507941-34508021)
chr1 (313-364)||(13534228-13534279)
chr1 (317-397)||(8274441-8274523)
chr1 (324-385)||(16280363-16280424)
chr1 (327-368)||(10032184-10032225)
chr1 (324-397)||(15114212-15114284)
chr1 (324-397)||(15127228-15127300)
chr1 (324-380)||(15120953-15121008)
chr1 (324-380)||(15145141-15145196)
[»] chr7 (9 HSPs)
chr7 (313-463)||(15468262-15468411)
chr7 (313-409)||(32021887-32021984)
chr7 (311-463)||(3997167-3997325)
chr7 (319-463)||(4407416-4407559)
chr7 (317-385)||(11842682-11842750)
chr7 (317-397)||(30460225-30460305)
chr7 (316-463)||(4463437-4463585)
chr7 (317-353)||(980847-980883)
chr7 (324-385)||(12727731-12727794)
[»] chr6 (6 HSPs)
chr6 (318-463)||(31633589-31633734)
chr6 (318-458)||(33325855-33325993)
chr6 (327-463)||(14641373-14641507)
chr6 (324-375)||(15141998-15142047)
chr6 (327-396)||(8212328-8212398)
chr6 (330-368)||(17112323-17112361)
[»] chr3 (8 HSPs)
chr3 (313-463)||(2899848-2900000)
chr3 (316-393)||(4861152-4861228)
chr3 (316-393)||(4881159-4881235)
chr3 (319-452)||(10997354-10997487)
chr3 (318-398)||(40790593-40790673)
chr3 (324-384)||(20970294-20970354)
chr3 (324-372)||(47165988-47166036)
chr3 (315-398)||(51661604-51661687)
[»] scaffold0195 (2 HSPs)
scaffold0195 (318-463)||(8994-9134)
scaffold0195 (318-463)||(14383-14523)
[»] scaffold0176 (1 HSPs)
scaffold0176 (326-437)||(26387-26497)
[»] scaffold0291 (1 HSPs)
scaffold0291 (324-385)||(21959-22020)
[»] scaffold0063 (1 HSPs)
scaffold0063 (324-384)||(63513-63574)
[»] chr8 (2 HSPs)
chr8 (316-397)||(15234834-15234915)
chr8 (327-369)||(29233297-29233339)
[»] scaffold0356 (1 HSPs)
scaffold0356 (327-463)||(13660-13796)
[»] scaffold0012 (1 HSPs)
scaffold0012 (318-397)||(52636-52715)
[»] scaffold0238 (1 HSPs)
scaffold0238 (324-385)||(4370-4432)
[»] scaffold1390 (1 HSPs)
scaffold1390 (326-375)||(1302-1350)
[»] scaffold0123 (1 HSPs)
scaffold0123 (324-364)||(30081-30121)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 36489668 - 36489208
Alignment:
Q  1 aaaatcgatctttaactatattaagaatcggttgtggaagcttaattcttcttgttaagaatagtaagaagctctctcggacaggaaatgaggagttcat 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||    ||||||||||||||||||||| |||||||| ||| |||||||    
T  36489668 aaaatcgatctttaactacattaagaatcggttgtggaagcttaattcttgttg----gaatagtaagaagctctctcgaacaggaaaggag-agttcat 36489574  T
Q  101 taaatcagttgctcaaactatcccttcttattgtattagtgtatttctattacatcattcctttgcagaaaagat---tgaaaaaatgttacactctttt 197  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||    
T  36489573 taaatcagttgctcaagctatcccttcttattgtattagtgtatttctattacatcattcctttgcagaaaagatgattgaaaaaatattacactctttt 36489474  T
Q  198 caaagctatatacctgtttaatagggattttttgggagtgtcttttagggcataatcctatctttgtttgacgtagaatttggtcttctcaacaatgtca 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36489473 caaagctatatacctgtttaatagggattttttgggagtgtcttttaggacataatcctatctttgtttgatgtagaatttggtcttctcaacaatgtca 36489374  T
Q  298 acataatcctatacctttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||     
T  36489373 acataatcctatatttttgtttttttttttagggttttggtctagtctcccctcttcttgtatatattttttctctttattaataaatttttagagttta 36489274  T
Q  398 atgggcaaaggacgatggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
      || || |||||| |||||| || |||||||||||||||| | | ||||||||| ||||||||||    
T  36489273 gcggacagaggacggtggttttccaggatgtcaacctaattgggacgtcggtgttacctcctgatg 36489208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 411
Target Start/End: Complemental strand, 17065415 - 17065318
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacg 411  Q
    ||||||||||||||||||||||||| | |||| ||||||| ||||||||| ||||  |||||| ||||||||  ||||||||| ||||| || ||||||    
T  17065415 tttgttttttctttgagggttttggcccagtcccccctctccttgtatat-ttttcccccttttttaataaaattttagagttagatggacataggacg 17065318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 28682903 - 28682843
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaa 384  Q
    ||||||||||||||||||||| |||||| | |||||| ||||||| |||||| ||||||||    
T  28682903 tttgagggttttggtctagtcccccctccttttgtatttatttttccccttttttaataaa 28682843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 10720806 - 10720886
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccct--cttcttgtatatattttttccctttattaataaatatttagagttt 396  Q
    |||||||||||||| |||| | |||||| |||||  ||||||||||||||||| ||||||| ||||||||  ||||||||||    
T  10720806 ttttttctttgaggtttttcgcctagtcccccctttcttcttgtatatatttt-tcccttttttaataaaattttagagttt 10720886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 38302632 - 38302551
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatat----tttttccctttattaataaatatttag 391  Q
    |||||||||| ||| |||||||||| |||||| ||||||| |||||||||||    ||||||||||| ||||||||| |||||    
T  38302632 tttgtttttttttttagggttttggcctagtc-cccctctccttgtatatatatattttttcccttttttaataaatttttag 38302551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 21878045 - 21877985
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatatttttt-ccctttattaataaa 384  Q
    ||||||||||||||||||||| |||||||| |||||  |||||||| |||||| ||||||||    
T  21878045 tttgagggttttggtctagtcccccctctt-ttgtaattattttttccccttttttaataaa 21877985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 367
Target Start/End: Complemental strand, 3040773 - 3040732
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatatttt 367  Q
    ||||||||||||||||||||| |||||||  |||||||||||||    
T  3040773 tttgagggttttggtctagtcccccctct--ttgtatatatttt 3040732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 17764845 - 17764885
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctctt 353  Q
    ||||||||| ||||||||||||||| |||||| ||||||||    
T  17764845 tttgtttttcctttgagggttttggcctagtcccccctctt 17764885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 420
Target Start/End: Complemental strand, 24440134 - 24440027
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacga 412  Q
    |||||||||||||||||||||||||  ||||| | ||||| |||||||||||||||||||||||||||||||| || |||||||| |||| | ||||||     
T  24440134 tttgttttttctttgagggttttggcatagtcccacctctccttgtatatattttttccctttattaataaattttaagagtttggtgggtagaggacgg 24440035  T
Q  413 tggtttcc 420  Q
     |||||||    
T  24440034 aggtttcc 24440027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 463
Target Start/End: Original strand, 28948796 - 28948942
Alignment:
Q  316 gttttttctttgaggg-ttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatg 414  Q
    |||||||||||||||| |||||| |||||| ||||||| | |||||||||||||||  ||||||||||||| |||||||||||   |||| ||||||  |    
T  28948796 gttttttctttgaggggttttggcctagtcccccctctccatgtatatattttttc--tttattaataaatttttagagtttggcaggcagaggacggag 28948893  T
Q  415 gtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    |||||||||| || |||| || || | |||||||||||| |||||||||    
T  28948894 gtttcccggggtgccaacatagttgggatgtcggtgttgtctcctgatg 28948942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 463
Target Start/End: Complemental strand, 40926611 - 40926468
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||||||| |||||||| ||| || ||||||||||||||||||| |||||||||| ||||||||| |||| ||||||   |||| |||| |  |||    
T  40926611 ttttttctttgatggttttggcctaatcccccctcttcttgtatatat-ttttcccttttttaataaat-tttatagtttg-gcggcataggatggaggt 40926515  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    |||||||| || ||||||| || | |||||| |||| ||||||||||    
T  40926514 ttcccggggtgccaacctagttgggatgtcgatgtttcctcctgatg 40926468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 460
Target Start/End: Original strand, 30418898 - 30419046
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccc-tttattaataaatatttagagtttgatgggcaaaggacg 411  Q
    ||||||||||||||||||||||||| |||||| ||||||  ||||||||| ||||||||| ||| ||||||||  ||||||||| || || || ||||||    
T  30418898 tttgttttttctttgagggttttggcctagtcccccctccccttgtatattttttttccctttttttaataaaattttagagttagacggccataggacg 30418997  T
Q  412 atggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctg 460  Q
      || |||||| | || ||||||| || | |||||| ||| || |||||    
T  30418998 gaggattcccgtggtgccaacctagttgggatgtcgatgtggcttcctg 30419046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 463
Target Start/End: Original strand, 17151232 - 17151366
Alignment:
Q  328 agggttttggtctagtctcccctcttcttgtatatattttttcc-ctttattaataaatatttagagtttgatgggcaaaggacgatggtttcccgggat 426  Q
    |||||||| | |||||| || |||||||||||||||||||||||  ||| |||||||| ||||||||||||   |||| |||| |  ||||||||||  |    
T  17151232 agggtttttgcctagtcccctctcttcttgtatatattttttccttttttttaataaa-atttagagtttg-gcggcataggatggaggtttcccggagt 17151329  T
Q  427 gtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    | ||||||| || | ||||| ||||| ||||||||||    
T  17151330 gccaacctagttggcatgtcagtgtttcctcctgatg 17151366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 17679861 - 17679799
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccc-tttattaataaat 385  Q
    |||||||||||||||||||||  ||||||| |||||  ||||||||||| ||| |||||||||    
T  17679861 tttgagggttttggtctagtcctccctctttttgtaattattttttcccgttttttaataaat 17679799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 462
Target Start/End: Complemental strand, 32234583 - 32234434
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttat-taataaatatttagagtttgatgggcaaaggacg 411  Q
    ||||||||||||||||||||||| | |||||| ||||||| ||| ||||| |||   |||||| | |||||||  ||||||||| ||  |||| ||||||    
T  32234583 tttgttttttctttgagggtttttgcctagtcccccctctccttatatat-tttcccccctttttctaataaaattttagagttagacaggcataggacg 32234485  T
Q  412 atggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgat 462  Q
      || |||||| | || ||||||| || | ||||||||||  |||||||||    
T  32234484 gaggcttcccgaggtgccaacctagttgggatgtcggtgtgacctcctgat 32234434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 9892282 - 9892221
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttt-tccctttattaataaa 384  Q
    ||||||||||||||||||||| |||||| | ||||| ||||||||  |||||| ||||||||    
T  9892282 tttgagggttttggtctagtcacccctccttttgtaaatatttttcccccttttttaataaa 9892221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 313 - 463
Target Start/End: Original strand, 25219575 - 25219724
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacga 412  Q
    ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| || ||| ||||||||  |||||||||||   |||| ||| ||     
T  25219575 tttgttttttctttgagggttttggcctagtctcccttctttttgtatatatttttccctttttttaataaaattttagagtttg-gcggcatagggcgg 25219673  T
Q  413 tggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
      |||||||| | || ||||||| || ||||||||||||| ||||||||||    
T  25219674 aagtttcccgaggtgccaacctagttggaatgtcggtgtttcctcctgatg 25219724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 44453232 - 44453087
Alignment:
Q  318 tttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggtt 417  Q
    ||||| |||||||||||||| |||||| ||||||| ||||||||| ||||  |||||| ||||||||  |||||||||||| ||| | ||||||  || |    
T  44453232 tttttatttgagggttttggcctagtcccccctctccttgtatattttttcccccttttttaataaaattttagagtttgacgggtataggacggaggct 44453133  T
Q  418 tcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    ||||||| || ||||||| || | |||||| ||| |||||||||||    
T  44453132 tcccggggtgccaacctagttgggatgtcgatgtggcctcctgatg 44453087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 463
Target Start/End: Original strand, 23795388 - 23795533
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||  || ||| || |||||  ||||||||||||  |||| |||| |  |||    
T  23795388 ttttttcattgagggttttggtctaatgtcccctcttcttgtatatattttcccctttttttgataaaattttagagtttga-cggcataggatggaggt 23795486  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    ||| | ||||| ||||||| || | |||||||| ||  |||||||||    
T  23795487 ttcacaggatgccaacctagttgggatgtcggtattttctcctgatg 23795533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 8656245 - 8656195
Alignment:
Q  313 tttgttttttctttgagggttttggtctagt-ctcccctcttcttgtatat 362  Q
    ||||||||||||||||||||||||| ||||| | ||||||| |||||||||    
T  8656245 tttgttttttctttgagggttttggcctagtccccccctctccttgtatat 8656195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 41068774 - 41068828
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttcc 371  Q
    |||||| |||||||||||||| |||||| ||||||| | |||||||| |||||||    
T  41068774 ttttttatttgagggttttggcctagtcccccctctccctgtatatactttttcc 41068828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 21180165 - 21180119
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccc 372  Q
    ||||||||||||||||||||| | |||||  ||||||||||||||||||    
T  21180165 tttgagggttttggtctagtccctcctct--ttgtatatattttttccc 21180119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 384
Target Start/End: Original strand, 34511995 - 34512052
Alignment:
Q  327 gagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaa 384  Q
    |||||||||||||||||| |||||| | |||||  ||||||| |||||| ||||||||    
T  34511995 gagggttttggtctagtcccccctccttttgtaattatttttccccttttttaataaa 34512052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 463
Target Start/End: Original strand, 13336945 - 13337021
Alignment:
Q  387 tttagagtttgatgggcaaaggacgatggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    |||||||||| | ||||| ||||||  || |||||||| |||||| ||| || | |||||||||| |||||||||||    
T  13336945 tttagagtttaacgggcataggacggaggcttcccggggtgtcaatctagttgggatgtcggtgtggcctcctgatg 13337021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 22391724 - 22391676
Alignment:
Q  316 gttttttctttgagggttttggtctagtctcccctcttcttgtatatat 364  Q
    ||||||||  ||||||||||||||| ||||| ||||| |||||||||||    
T  22391724 gttttttcagtgagggttttggtctggtctctcctctccttgtatatat 22391676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 398
Target Start/End: Complemental strand, 33040728 - 33040645
Alignment:
Q  315 tgttttttctttg-agggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttga 398  Q
    |||||| |||||| ||||||||||||||||| |||||| | |||||  |||||| ||| ||| ||||||||  ||||||||||||    
T  33040728 tgttttctctttggagggttttggtctagtcccccctcct-ttgtaattattttctcctttttttaataaaattttagagtttga 33040645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 313 - 463
Target Start/End: Original strand, 31893033 - 31893184
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccc--tttattaataaatatttagagtttgatgggcaaaggac 410  Q
    ||||||||||||||||||||||||| |||||| |||||||  |||||||| |||||||||  ||| ||||||||  |||||||||||| ||||| ||||     
T  31893033 tttgttttttctttgagggttttggcctagtcccccctctctttgtatattttttttcccctttttttaataaaattttagagtttgacgggcataggat 31893132  T
Q  411 gatggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    |  || ||| ||||||| ||||||| || | ||||||||| ||||||||||||    
T  31893133 ggaggcttctcgggatgccaacctagttgggatgtcggtg-tgcctcctgatg 31893184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 463
Target Start/End: Original strand, 19100207 - 19100355
Alignment:
Q  313 tttgttttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacg 411  Q
    |||| |||||||| |||||||||||| |||||  |||||||||||||||||| ||||||| ||| ||||||||  ||||||||||||  |||| ||||||    
T  19100207 tttgctttttcttctgagggttttggcctagttccccctcttcttgtatata-tttttcctttttttaataaaattttagagtttga-cggcataggacg 19100304  T
Q  412 atggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
     ||||||||| ||||| ||||||| || | |||||| |||| ||||| ||||    
T  19100305 gtggtttccc-ggatgccaacctagttggtatgtcgatgtttcctcccgatg 19100355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 458
Target Start/End: Original strand, 32943677 - 32943816
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||||||| |  ||| ||||||||| ||| |||||||   |||| | ||||  |||    
T  32943677 tttttcttctgagggttttggcctagtcccccctcttcttgtatatatttttccttttttttaataaattttttgagtttg-gcggcataagacggaggt 32943775  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcc 458  Q
    ||||| ||||| |||||||||| | ||||||||||| |||||    
T  32943776 ttccc-ggatgccaacctaattggtatgtcggtgtttcctcc 32943816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 463
Target Start/End: Complemental strand, 3833586 - 3833433
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccc---tttattaataaatatttagagtttgatgggcaaagga 409  Q
    ||||||||||||||||||||||||| |||||| ||| |||  ||||| |  | |||||||   ||| ||||||||  ||||||||| || ||||| ||||    
T  3833586 tttgttttttctttgagggttttggcctagtcccccatctctttgtaaaattattttccccttttttttaataaaattttagagttagacgggcatagga 3833487  T
Q  410 cgatggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    ||  || |||||||| || ||||||| || | |||||||||| |||||||||||    
T  3833486 cggaggcttcccggggtgccaacctagttgggatgtcggtgtagcctcctgatg 3833433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 28015922 - 28016002
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    ||||||||  ||||||||||| |||||| ||||||||||||||||||||||| || ||| ||||||||  |||| ||||||    
T  28015922 ttttttctcagagggttttggcctagtcccccctcttcttgtatatatttttccctttttttaataaaattttatagtttg 28016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 452
Target Start/End: Complemental strand, 12629401 - 12629267
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| |||||||||||| ||| || |||||||||||||||||||||||    ||| ||||||||  |||||||||||   |||| ||||||  |||    
T  12629401 tttttcttctgagggttttggcctaatcccccctcttcttgtatatatttttctttttttttaataaaattttagagtttg-gcggcataggacggaggt 12629303  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgtt 452  Q
    ||||||||||| ||| ||| || | |||||||||||    
T  12629302 ttcccgggatgccaatctagttgggatgtcggtgtt 12629267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 41574437 - 41574370
Alignment:
Q  330 ggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||||||||||  |||||||||||||||||||||| |  ||| ||||||||  |||||||||||    
T  41574437 ggttttggtctagtccgccctcttcttgtatatatttttccttttttttaataaaattttagagtttg 41574370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 43021879 - 43021808
Alignment:
Q  326 tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    ||||| |||||| |||||| ||||||||| |||||||||||||||||  | ||||||||  |||||||||||    
T  43021879 tgaggattttggcctagtcccccctcttcctgtatatattttttcccccttttaataaaattttagagtttg 43021808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 34880067 - 34879990
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtt 395  Q
    ||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| |  ||| ||||||||  |||||||||    
T  34880067 ttttttctttgagggttttggcctagtccccccttttctt-tatatatttttccatttttttaataaaattttagagtt 34879990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 397
Target Start/End: Complemental strand, 34508021 - 34507941
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccc-tcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||| |||||||||||| |||||| |||| ||||||||||||||| |||||| ||| ||||||||  |||||||||||    
T  34508021 tttttcttctgagggttttggcctagtccccccctcttcttgtatatat-ttttcctttttttaataaaattttagagtttg 34507941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 13534228 - 13534279
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatat 364  Q
    |||||||||||||| || |||||||||||||  ||||||||||| |||||||    
T  13534228 tttgttttttctttaagtgttttggtctagtaccccctcttcttttatatat 13534279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 8274441 - 8274523
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccc-tcttcttgtatatat-tttttccctttattaataaatatttagagtttg 397  Q
    |||||| | ||||||||||| |||| || |||| ||||||||||||||| | ||| ||||||||||||| | |||||||||||    
T  8274441 ttttttttctgagggttttgatctaatccccccctcttcttgtatatatatattttcctttattaataagtttttagagtttg 8274523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 16280363 - 16280424
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatatttttt-ccctttattaataaat 385  Q
    ||||||||||||||||||||| |||||||| |||||  |||||||| |||||| |||||||||    
T  16280363 tttgagggttttggtctagtcccccctctt-ttgtaattattttttccccttttttaataaat 16280424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 10032225 - 10032184
Alignment:
Q  327 gagggttttggtctagtctcccctcttcttgtatatattttt 368  Q
    ||||||||||| |||||| |||||||||||||| ||||||||    
T  10032225 gagggttttggcctagtcccccctcttcttgtacatattttt 10032184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 15114284 - 15114212
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||||||||  |||||| |||||| |||||||| |||||||||||||| ||||   |||||| |||||||    
T  15114284 tttgagggttttgtcctagtc-cccctcctcttgtatttattttttcccttttttaaattatattttgagtttg 15114212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 15127300 - 15127228
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||||||||  |||||| |||||| |||||||| |||||||||||||| ||||   |||||| |||||||    
T  15127300 tttgagggttttgtcctagtc-cccctcctcttgtatttattttttcccttttttaaattatattttgagtttg 15127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 15121008 - 15120953
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaa 380  Q
    |||||||||||||| |||||| |||||| |||||||| |||||||| ||||| ||||    
T  15121008 tttgagggttttggcctagtc-cccctcctcttgtatttatttttttccttttttaa 15120953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 380
Target Start/End: Complemental strand, 15145196 - 15145141
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaa 380  Q
    |||||||||||||| |||||| |||||| |||||||| |||||||| ||||| ||||    
T  15145196 tttgagggttttggcctagtc-cccctcctcttgtatttatttttttccttttttaa 15145141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 463
Target Start/End: Complemental strand, 15468411 - 15468262
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacga 412  Q
    ||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||  |||||| ||||||||  ||||||||| || | ||| |||||      
T  15468411 tttgttttttctttgagggttttggcctagtcccccctctccttgtatat-ttttcccccttttttaataaaattttagagttagacgagcataggacag 15468313  T
Q  413 tggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
     ||  ||||| | || ||||||| || | |||||||||| |||||||||||    
T  15468312 aggcctcccgaggtgccaacctagttgggatgtcggtgtggcctcctgatg 15468262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 409
Target Start/End: Original strand, 32021887 - 32021984
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccc-tttattaataaatatttagagtttgatgggcaaagga 409  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||| ||||  ||| ||| ||||||||  |||||||||||| ||||| ||||    
T  32021887 tttgttttttctttgagggttttggtctagtcccccctctctttgtatattttttccccctttttttaataaaattttagagtttgacgggcatagga 32021984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 463
Target Start/End: Complemental strand, 3997325 - 3997167
Alignment:
Q  311 cctttgttttttctttgagggttttggtctagtctcccctcttcttgtatata------ttttttccc-tttattaataaatatttagagtttgatgggc 403  Q
    ||||||||||||| ||||||||||||| |||||| | ||||| ||||||||||      ||||||||| ||| |||||||| |||||||| ||| | |||    
T  3997325 cctttgttttttcgttgagggttttggcctagtccctcctctccttgtatatatatattttttttccctttttttaataaa-atttagagattggtaggc 3997227  T
Q  404 aaaggacgatggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    | | ||||  ||  |||||||||| ||||||| || | ||||||||||||||||||||||    
T  3997226 ataagacggaggcgtcccgggatgccaacctagttgggatgtcggtgttgcctcctgatg 3997167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 463
Target Start/End: Complemental strand, 4407559 - 4407416
Alignment:
Q  319 ttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggttt 418  Q
    |||| |||||| ||||||| |||||| ||||||| ||||||||| |||   |||||| ||||||||  |||||||||||| ||||| ||||||  || ||    
T  4407559 ttttatttgagagttttggcctagtc-cccctctccttgtatatttttccccccttttttaataaaattttagagtttgacgggcataggacggaggctt 4407461  T
Q  419 cccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
     | ||| || ||||||| || | |||||||||| |||||||||||    
T  4407460 tctggggtgccaacctagttgggatgtcggtgtggcctcctgatg 4407416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 11842682 - 11842750
Alignment:
Q  317 ttttttctttgagggttttgg-tctagtctcccctcttcttgtatatattttttccctttattaataaat 385  Q
    |||||||||||||||||| || ||||||| ||| ||| |||||||||| |||||||||||||||||||||    
T  11842682 ttttttctttgagggtttagggtctagtcccccttctacttgtatata-tttttccctttattaataaat 11842750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 30460305 - 30460225
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    ||||||||||||||||||||| |||| | ||  ||||||||| |||||||||||  ||| ||||||||  |||||||||||    
T  30460305 ttttttctttgagggttttggcctagccccctatcttcttgtgtatattttttcatttttttaataaaattttagagtttg 30460225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 463
Target Start/End: Complemental strand, 4463585 - 4463437
Alignment:
Q  316 gttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccc--tttattaataaatatttagagtttgatgggcaaaggacgat 413  Q
    ||||||||||||||||||||||||||||  ||||||| |||||| || ||||  |||  ||| ||||||||  |||||||||||  ||||| |||| |      
T  4463585 gttttttctttgagggttttggtctagttccccctctccttgtaaat-ttttcccccatttttttaataaaattttagagtttggcgggcataggatgga 4463487  T
Q  414 ggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    || |||| ||| || ||||||| || | ||||| |||| |||||||||||    
T  4463486 ggcttcctggggtgccaacctagttgggatgtcagtgtggcctcctgatg 4463437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Original strand, 980847 - 980883
Alignment:
Q  317 ttttttctttgagggttttggtctagtctcccctctt 353  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  980847 ttttttctttgagggtattggtctagtcccccctctt 980883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 12727731 - 12727794
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatatttttt--ccctttattaataaat 385  Q
    ||||||||||||||||||||| || ||| | |||||| ||||||||  |||||| |||||||||    
T  12727731 tttgagggttttggtctagtcccctctccttttgtatttatttttttccccttttttaataaat 12727794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 31633734 - 31633589
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||||||| |  ||| ||||||||  |||||||||||   |||| ||||||  |||    
T  31633734 tttttcttctgagggttttggcctagtcccccctcttcttgtatatatttttccttttttttaataaaattttagagtttg-gcggcataggacggaggt 31633636  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    ||||| ||||| ||| ||| || | ||||||||||| ||||| ||||    
T  31633635 ttcccaggatgccaatctagttgggatgtcggtgtttcctcccgatg 31633589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 318 - 458
Target Start/End: Complemental strand, 33325993 - 33325855
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||| |||||| ||| ||||||||  ||||||||||||  |||| ||||||  |||    
T  33325993 tttttcttctgagggttttggcctagtcccccctcttcttgtatatat-ttttcctttttttaataaaattttagagtttga-cggcataggacggaggt 33325896  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcc 458  Q
    ||||| ||||| || |||| || | ||||||||||| |||||    
T  33325895 ttccc-ggatgccagcctagttggtatgtcggtgtttcctcc 33325855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 463
Target Start/End: Original strand, 14641373 - 14641507
Alignment:
Q  327 gagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggtttcccgggat 426  Q
    ||||||||||| |||||| |||||||||||||| |  |||||||||||| ||||||||  ||||||| |||   |||| |||| |  || |||||||| |    
T  14641373 gagggttttggcctagtcccccctcttcttgtaca-gttttttcccttttttaataaagttttagagattg-gcggcataggatggagggttcccggggt 14641470  T
Q  427 gtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    | ||||||| || | ||||||||||| |||| |||||    
T  14641471 gccaacctagttgggatgtcggtgttccctcttgatg 14641507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 15142047 - 15141998
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttcccttt 375  Q
    |||||||||||||| |||||| |||||||  |||||||||||||||||||||    
T  15142047 tttgagggttttggcctagtcccccctct--ttgtatatattttttcccttt 15141998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 8212398 - 8212328
Alignment:
Q  327 gagggttttggtctagtctcccctcttcttgtatatattttttcc-ctttattaataaatatttagagttt 396  Q
    ||||||||||| |||||| |||||||| |||||||||||||| ||  ||| ||||||||  ||||||||||    
T  8212398 gagggttttggcctagtcccccctctttttgtatatatttttcccttttttttaataaaattttagagttt 8212328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 17112361 - 17112323
Alignment:
Q  330 ggttttggtctagtctcccctcttcttgtatatattttt 368  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  17112361 ggttttggtctagtgccccctcttcttgtatatattttt 17112323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 463
Target Start/End: Original strand, 2899848 - 2900000
Alignment:
Q  313 tttgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttatt--aataaatatttagagtttgatgggcaaaggac 410  Q
    |||||||||| ||| |||||||||| |||||| ||||||| ||||||||| ||||| |||||| ||  ||||||  ||||||||| |||||||| |||||    
T  2899848 tttgtttttttttttagggttttggcctagtcccccctctccttgtatatttttttccccttttttttaataaaattttagagttagatgggcataggac 2899947  T
Q  411 gatggtttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    |  || || || || || ||||||| || | ||||| |||| |||||||||||    
T  2899948 ggaggctttccagggtgccaacctagttgggatgtcagtgtagcctcctgatg 2900000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 4861228 - 4861152
Alignment:
Q  316 gttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagag 393  Q
    |||||||| |||||| |||||| ||||||  | |||| ||||||||||||||| |||||| |||||||| ||||||||    
T  4861228 gttttttcattgaggattttggcctagtcctcactctccttgtatatatttttacccttttttaataaa-atttagag 4861152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 4881235 - 4881159
Alignment:
Q  316 gttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagag 393  Q
    |||||||| |||||| |||||| ||||||  | |||| ||||||||||||||| |||||| |||||||| ||||||||    
T  4881235 gttttttcattgaggattttggcctagtcctcactctccttgtatatatttttacccttttttaataaa-atttagag 4881159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 452
Target Start/End: Original strand, 10997354 - 10997487
Alignment:
Q  319 ttttcttt-gagggttttggtctagtctcccctcttcttgtatatattttttccc-tttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| ||||||||||| |||||| ||||||||||| ||||| ||||||||| ||| || |||||  ||||||||||||  | || | ||||  |||    
T  10997354 ttttctttcgagggttttggcctagtc-cccctcttcttttatattttttttccctttttttgataaaattttagagtttga-cgacataagacggaggt 10997451  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgtt 452  Q
    ||| |||| || |||||||||| | |||||||||||    
T  10997452 ttctcggggtgccaacctaattgggatgtcggtgtt 10997487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 40790593 - 40790673
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttga 398  Q
    |||||||| ||||| |||||| |||||| ||||||||||||||| || ||||||| ||| ||||||||  |||||| |||||    
T  40790593 tttttcttctgaggattttggcctagtcccccctcttcttgtatgta-tttttcctttttttaataaaattttagaatttga 40790673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Complemental strand, 20970354 - 20970294
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaa 384  Q
    ||||||||||||||||||||| |||||| | |||||  ||||||| |||||| ||| ||||    
T  20970354 tttgagggttttggtctagtcccccctccttttgtaattatttttccccttttttattaaa 20970294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 47166036 - 47165988
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccc 372  Q
    ||||||||||||||||||||| |||||| | |||||  |||||||||||    
T  47166036 tttgagggttttggtctagtcccccctccttttgtaattattttttccc 47165988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 398
Target Start/End: Original strand, 51661604 - 51661687
Alignment:
Q  315 tgttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccc-tttattaataaatatttagagtttga 398  Q
    |||||||| || |||||||||||||||||| |||||| | |||||| ||||||  ||| ||| ||||||||  ||||||||||||    
T  51661604 tgtttttttttggagggttttggtctagtcccccctcct-ttgtatttattttccccctttttttaataaaattttagagtttga 51661687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 9134 - 8994
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| |||||||||||| |||||| ||||   ||||||||||| ||||||| ||| ||||||||  ||||||||||||  |||| ||||||  |||    
T  9134 tttttcttctgagggttttggcctagtcccccc---tcttgtatata-tttttcctttttttaataaaattttagagtttga-cggcataggacggaggt 9040  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    ||||| ||||| ||||||| || | ||||||||||| ||||| ||||    
T  9039 ttccc-ggatgccaacctagttggtatgtcggtgtttcctcccgatg 8994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 463
Target Start/End: Complemental strand, 14523 - 14383
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggt 416  Q
    |||||||| |||||||||||| |||||| ||||   ||||||||||| ||||||| ||| ||||||||  ||||||||||||  |||| ||||||  |||    
T  14523 tttttcttctgagggttttggcctagtcccccc---tcttgtatata-tttttcctttttttaataaaattttagagtttga-cggcataggacggaggt 14429  T
Q  417 ttcccgggatgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
    ||||| ||||| ||||||| || | ||||||||||| ||||| ||||    
T  14428 ttccc-ggatgccaacctagttggtatgtcggtgtttcctcccgatg 14383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 437
Target Start/End: Original strand, 26387 - 26497
Alignment:
Q  326 tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggtttcccggga 425  Q
    |||||||||||| |||||| ||||||||||||||||| ||||| || ||| || ||||   ||||||||||||  || | |||| |  ||||||||||||    
T  26387 tgagggttttggcctagtcccccctcttcttgtatatctttttcccattttttgataatattttagagtttga-cggtataggatggaggtttcccggga 26485  T
Q  426 tgtcaacctaat 437  Q
    || |||||||||    
T  26486 tgccaacctaat 26497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 22020 - 21959
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaat 385  Q
    ||||||||||||||||||||| |||||| | |||||  ||||| |||||||| |||||||||    
T  22020 tttgagggttttggtctagtcccccctccttttgtaattatttcttcccttttttaataaat 21959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 63513 - 63574
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatattttt-tccctttattaataaa 384  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||  |||||| ||||||||    
T  63513 tttgagggttttggtctagtctcccctccttttgtaaatatttttcccccttttttaataaa 63574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 397
Target Start/End: Complemental strand, 15234915 - 15234834
Alignment:
Q  316 gttttttctttgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||||||||||||||||| |||||| ||| ||| ||||||||| |||   || ||| ||||||||  |||||||||||    
T  15234915 gttttttctttgagggttttggcctagtcccccttctacttgtatatttttccccctttttttaataaaattttagagtttg 15234834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 369
Target Start/End: Original strand, 29233297 - 29233339
Alignment:
Q  327 gagggttttggtctagtctcccctcttcttgtatatatttttt 369  Q
    ||||||||||| |||||| |||||||| |||||||||||||||    
T  29233297 gagggttttggcctagtcccccctctttttgtatatatttttt 29233339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 463
Target Start/End: Original strand, 13660 - 13796
Alignment:
Q  327 gagggttttggtctagtctcccctcttc--ttgtatatattttttccctttattaataaatatttagagtttgatgggcaaaggacgatggtttcccggg 424  Q
    ||||||||||| |||||| ||||||| |  ||||| | | ||||||||||| ||| | |||  ||||||||||||||||| ||||||   ||||||||||    
T  13660 gagggttttggcctagtcccccctctccctttgtacagactttttcccttttttattgaat--ttagagtttgatgggcataggacggaagtttcccggg 13757  T
Q  425 atgtcaacctaattagaatgtcggtgttgcctcctgatg 463  Q
     || ||||||| || | ||||||| ||||  ||||||||    
T  13758 gtgccaacctagttgggatgtcggcgttgtttcctgatg 13796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 52636 - 52715
Alignment:
Q  318 tttttctt-tgagggttttggtctagtctcccctcttcttgtatatattttttccctttattaataaatatttagagtttg 397  Q
    |||||||| |||||||||||| |||||| |||||||| ||||||||| ||||||| ||| ||||||||  |||| ||||||    
T  52636 tttttcttctgagggttttggcctagtcccccctctttttgtatata-tttttcctttttttaataaaattttaaagtttg 52715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 4370 - 4432
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatatttttt-ccctttattaataaat 385  Q
    ||||||||||||||||||||| |||||| | |||||  |||||||| |||||| |||||||||    
T  4370 tttgagggttttggtctagtcccccctccttttgtaattattttttccccttttttaataaat 4432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 1350 - 1302
Alignment:
Q  326 tgagggttttggtctagtctcccctcttcttgtatatattttttcccttt 375  Q
    |||||||||||| |||||| |||||||| ||||| |||||||||||||||    
T  1350 tgagggttttggcctagtcccccctctt-ttgtacatattttttcccttt 1302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 364
Target Start/End: Complemental strand, 30121 - 30081
Alignment:
Q  324 tttgagggttttggtctagtctcccctcttcttgtatatat 364  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  30121 tttgagggttttggccaagtcccccctcttcttgtatatat 30081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University