View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_1 (Length: 670)
Name: NF2655_low_1
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 457 - 662
Target Start/End: Complemental strand, 1095084 - 1094879
Alignment:
| Q |
457 |
ctatttatactgcaaaatattcccaaacttataccaacggaaaactcctatgggtaaaacaattaaatacatgtcattgacaatagatgtaagtcttaaa |
556 |
Q |
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| T |
1095084 |
ctatttatactgcaaaatattcccaaacttataccaacggaaaactgctatgggtaaaacaattaaatacatgtcattgacaatagatgtaagtcttaaa |
1094985 |
T |
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| Q |
557 |
ttttgttgtctgaagctaccaaagctatatgctattgggacggaattttgccgttggtatatgtaatcaaagttgacagaactaaacgtccattggtata |
656 |
Q |
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| T |
1094984 |
ttttgttgtctgaaactaccaaagctatatgctattgggacggaattttgccgttggtatatgtaatcaaagttgacagaactaaacgtccattggtata |
1094885 |
T |
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| Q |
657 |
tttttc |
662 |
Q |
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| |||| |
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| T |
1094884 |
tgtttc |
1094879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 221 - 424
Target Start/End: Complemental strand, 1095317 - 1095117
Alignment:
| Q |
221 |
cctgtttcatgtcccagatactagtgatgaggttgaaaatttaaaggctaaaacaaaggtatgttgtttaaaattcttgtaagacttgttaccttttcaa |
320 |
Q |
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| T |
1095317 |
cctgtttcatgtcccagatactagtgatgaggttgaaaatttaaaggctaaaacaaaggtatgttgtttaaaattcttgtaagacttgttaccttttcaa |
1095218 |
T |
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| Q |
321 |
tataattgaagttttattttgttttgtttcataattatagtgggtgtatactaaaattctagtgagtgatgatgtatacaaaaatattggtataccttta |
420 |
Q |
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| T |
1095217 |
tataattgaagttttattttgttttgtttcataattatagtgggtgtatactaaaattctagtgagt---gatgtatacaaaaatattggtataccttta |
1095121 |
T |
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| Q |
421 |
tatt |
424 |
Q |
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|||| |
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| T |
1095120 |
tatt |
1095117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 1095515 - 1095367
Alignment:
| Q |
17 |
agttataaggatacagatttgcataactcacgtttttgttaatttagctcatatatgactttatcatgtatacttgagcaaatgaaatatctaagtgaca |
116 |
Q |
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| T |
1095515 |
agttataaggatacagatttgcataactcacgtttttgttaatttagctcatatatgactttatcatgtatacttgagcaaatgaaatatctaagtgaca |
1095416 |
T |
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| Q |
117 |
atcacatactgattaaataggtaagtacaaatcacatacaaatattagt |
165 |
Q |
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| T |
1095415 |
atcacatactgattaaataggtaagtacaaatcacatacaaatattagt |
1095367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 528 - 657
Target Start/End: Complemental strand, 1078208 - 1078079
Alignment:
| Q |
528 |
tgtcattgacaatagatgtaagtcttaaattttgttgtctgaagctaccaaagctatatgctattgggacggaattttgccgttggtatatgtaatcaaa |
627 |
Q |
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| T |
1078208 |
tgtcattgaccgtaggtataagtctcacattttgttgtccaaaactactgtagctataggctattgagatgaaatttttccattggtatatctaatcaaa |
1078109 |
T |
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| Q |
628 |
gttgacagaactaaacgtccattggtatat |
657 |
Q |
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| T |
1078108 |
gttgacggaactaaacgtccattgatatat |
1078079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 1051293 - 1051215
Alignment:
| Q |
57 |
aatttagctcatatatgactttatcatgtatacttgagcaaatgaaatatctaagtgacaatcacatactgattaaata |
135 |
Q |
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| T |
1051293 |
aatttagctcatatacacctttatcatgtttgcatgagcaaataaaatatctaagtgacaataacatactgatcaaata |
1051215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 600 - 662
Target Start/End: Complemental strand, 1065657 - 1065595
Alignment:
| Q |
600 |
aattttgccgttggtatatgtaatcaaagttgacagaactaaacgtccattggtatatttttc |
662 |
Q |
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|||||| |||||||||||| |||||||||||||| || |||||||||||||||||||| |||| |
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| T |
1065657 |
aatttttccgttggtatatctaatcaaagttgacggagctaaacgtccattggtatatgtttc |
1065595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 1094361 - 1094301
Alignment:
| Q |
25 |
ggatacagatttgcataactcacgtttttgttaatttagctcatatatgactttatcatgt |
85 |
Q |
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| T |
1094361 |
ggatacacatttgcataacttatgtttcaattaatttagctcatatacaactttatcatgt |
1094301 |
T |
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