View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_11 (Length: 462)
Name: NF2655_low_11
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 2131297 - 2131722
Alignment:
| Q |
1 |
atagagttgtctggttatggaaatacatgactcaattcaaaatattatagactctttttctaaactatcattaattcactagattcctctaaacatcgta |
100 |
Q |
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| T |
2131297 |
atagagttgtctggttatggaaatacatgactcaattcaaaatattatagactctttttctagactattagtaattcactagattcctctaaacatccta |
2131396 |
T |
|
| Q |
101 |
agctaaaatgacnnnnnnnnnnnctctttaaaacactaaaatacatgatatatgataaagagtcacgacaaccctaaacttaaagtatcgcttgtcctca |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
2131397 |
agctaaaatgacaaaaaaaaaa-ctctttaaaacactaaaatacatgatatatgataaagagtcaccacaaccccatacttaaagtatcgcttgtcctca |
2131495 |
T |
|
| Q |
201 |
agtaactaaaatagtcatacaattagtaaagtaacataaatttccaactacaatcattttatccgttcatttatataatccatttttacagtctcaaacg |
300 |
Q |
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| T |
2131496 |
agtaactaaa-tagccatacaattagtaaagtaacataaatttccaactacaatcattttatccgttcatttatataatcca--------------aacg |
2131580 |
T |
|
| Q |
301 |
gttattatcgtaatttcattgaaggtttttgtaagtgttgcctttgatcaattcgacccataaggaagaattgtttgtgtgggatggctagagtgaggag |
400 |
Q |
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| T |
2131581 |
gttattatcgtaaattcattgaaggtttttgtaagtgttgcctttgatcaattcgacccataaggaagaattgtttgtgtgggatggctagagtgaggag |
2131680 |
T |
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| Q |
401 |
aacttccaaaaacttaagagacgattaacttctgcaccgatc |
442 |
Q |
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| T |
2131681 |
aacttccaaaaacttaagagacgattaacttctgcaccgatc |
2131722 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 24750922 - 24750959
Alignment:
| Q |
168 |
acaaccctaaacttaaagtatcgcttgtcctcaagtaa |
205 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |
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| T |
24750922 |
acaaccctaaacttaaactattgcttgtcctcaagtaa |
24750959 |
T |
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