View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_12 (Length: 455)
Name: NF2655_low_12
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 47425797 - 47425598
Alignment:
| Q |
16 |
attatactgctgatgtgatttttgtttggtgttgttgtggagtagtgatttaatacattgcaggggtaatatgtctttgaatgtgaggggttggttaggg |
115 |
Q |
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| T |
47425797 |
attatactcctgatgtgatttttgtttggtgttgttgtggagtagtgatttaatacattgcaggggtaatatgtctttgaatgtgaggggttggttaggg |
47425698 |
T |
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| Q |
116 |
gctttatattcaccaccctacgatgtttttctatttttggcttgatgttcttgcaatttgtttaagccatgggtccatggcctttactgggctaaaacaa |
215 |
Q |
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| T |
47425697 |
gctttatattcaccaccctacgatgtttttctatttttggcttgatgttcttgcaa-ttgtttaagccatgggtccatggcctttactgggctaaaacaa |
47425599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 241 - 434
Target Start/End: Complemental strand, 47425541 - 47425348
Alignment:
| Q |
241 |
gtgttttctatgacatgatttgaattctattggtcatgtggttctaaatgttttagtagtacaaataatcatgaaatgaatcgatgcctataacctaata |
340 |
Q |
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| T |
47425541 |
gtgttttctatgacatgatttgaattctattggtcatgtggttctaaatgttttagtagtacaaataatcatgaaatgaatcgatgcctataacctaata |
47425442 |
T |
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| Q |
341 |
catatgcttatggctaatggcaccatttaagttcagctgcttatttaatgttactaaatacagcgtagcatacagaaaacatctgaagtgcagt |
434 |
Q |
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| T |
47425441 |
catatgcttaaggctaatggcaccatttaagttcagctgcttatttaatgttactaaatacagcgtagcgtacagaaaacatctgaagtgcagt |
47425348 |
T |
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