View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_15 (Length: 429)
Name: NF2655_low_15
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 14192961 - 14193366
Alignment:
| Q |
17 |
ctgtgctcatatacctgattttatgcacttttctactgtgacagacagccggattagagatgcaaagccagcaaggcaagagctagttcgatgcgctact |
116 |
Q |
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| T |
14192961 |
ctgtgctcatatacttgatttaatgcacttttctactgtggaagacagccggattagagatgcaaagccagcaaggcaagagctagttcgatgcgctact |
14193060 |
T |
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| Q |
117 |
aagcttctagctgctgggataatcatcattccagtac---gccaggtgcnnnnnnntccggaggtaattgatttgacggatacattcgactttaatataa |
213 |
Q |
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| T |
14193061 |
agtcttctagctgctgggataatcatcattccagtaccctgcctggtggaacgaaatccccaggtacttgatttgacggatacattcgactttaatatac |
14193160 |
T |
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| Q |
214 |
gttttgacgataca---gggaagctaggaatcccggtgttgaatgtcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaa |
310 |
Q |
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|||| ||| ||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14193161 |
gtttggactatataacgggggagctacgaatcccggtgttgaatttcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaa |
14193260 |
T |
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| Q |
311 |
aattaacattaaatgcaaatatacatcctatgctcttttcttcaaaggtttgatatgctgtgaatctgacattggattgcttcaagaaacaggggttata |
410 |
Q |
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| T |
14193261 |
aattaacattagatgcaaatatacatcctatgctcttttcttcaaaggtttgatatgctgtgaatctgacattggattgcttcaagaaaaaggggttata |
14193360 |
T |
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| Q |
411 |
gtactg |
416 |
Q |
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| T |
14193361 |
gtactg |
14193366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 18521891 - 18522010
Alignment:
| Q |
248 |
gttgaatgtcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctctt |
347 |
Q |
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| T |
18521891 |
gttgtatgttaaggaaacaacggaagtgaagtggaggaatttgattgcttgggaacagaatagaatttgggtaagatgcaaatacacttcatatgctcta |
18521990 |
T |
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| Q |
348 |
ttcttcaaaggtttgatatg |
367 |
Q |
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| T |
18521991 |
ttcttcaatggtttgatatg |
18522010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 261 - 394
Target Start/End: Original strand, 4591407 - 4591540
Alignment:
| Q |
261 |
gaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctcttttcttcaaaggtt |
360 |
Q |
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| T |
4591407 |
gaaacaacggaagtgaagtggaggaatttgattgcttgggagcaaagcaaaaattggattagatgcaaatacacatcctatgcacttttctttaatggtt |
4591506 |
T |
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| Q |
361 |
tgatatgctgtgaatctgacattggattgcttca |
394 |
Q |
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| T |
4591507 |
tgatatgttgtgaacatgacattgaattgcttca |
4591540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 258 - 409
Target Start/End: Original strand, 4555103 - 4555254
Alignment:
| Q |
258 |
aaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctcttttcttcaaag |
357 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||| || |||||||| |||||||| || | |
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| T |
4555103 |
aaggaaagaacggaagtgaagtggaggaatttgattgcttgggagcaaagcaaaatttggagtaaatgcaaatacacttcctatgcacttttctttaatg |
4555202 |
T |
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| Q |
358 |
gtttgatatgctgtgaatctgacattggattgcttcaagaaacaggggttat |
409 |
Q |
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| T |
4555203 |
gtttgatatgttgtgagcatgacattgaaatgcttcaggaaaaaggggttat |
4555254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 399
Target Start/End: Original strand, 4620934 - 4621077
Alignment:
| Q |
256 |
tcaaggaaacaacggaagtgaggtggaggaatttgattgcttgggagcagagcaaaattaacattaaatgcaaatatacatcctatgctcttttcttcaa |
355 |
Q |
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||||||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||| |||| |||||||| || || ||||| ||||| ||||| |
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| T |
4620934 |
tcaaggaaacaactgaagttaagtggaggaatttgattgcttgggagcaaagcaaaatttggattagatgcaaatgcacttcttatgcactttttttcaa |
4621033 |
T |
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| Q |
356 |
aggtttgatatgctgtgaatctgacattggattgcttcaagaaa |
399 |
Q |
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| T |
4621034 |
tggtttgatatgctgtgagcatgacattgaattacttcaagaaa |
4621077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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