View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_18 (Length: 396)
Name: NF2655_low_18
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 38028366 - 38028209
Alignment:
| Q |
20 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatcttttaatgcttccacaactgcaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38028366 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatctttcaatgcttcaacaactgcaac |
38028267 |
T |
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| Q |
120 |
actgcctgcagctacccatgctctgcttgttgaactcattttgattaatattgattct |
177 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
38028266 |
actgcctgctgctacccatgctctacttgttgaactcatcttgattaatattgattct |
38028209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 38043006 - 38042849
Alignment:
| Q |
20 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatcttttaatgcttccacaactgcaac |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38043006 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatctttcaatgcttcaacaactgcaac |
38042907 |
T |
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| Q |
120 |
actgcctgcagctacccatgctctgcttgttgaactcattttgattaatattgattct |
177 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
38042906 |
actgcctgctgctacccatgctctacttgttgaactcatcttgattaatattgattct |
38042849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 38067353 - 38067196
Alignment:
| Q |
20 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatcttttaatgcttccacaactgcaac |
119 |
Q |
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| T |
38067353 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatctttcaatgcttcaacaactgcaac |
38067254 |
T |
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| Q |
120 |
actgcctgcagctacccatgctctgcttgttgaactcattttgattaatattgattct |
177 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
38067253 |
actgcctgctgctacccatgctctacttgttgaactcatcttgattaatattgattct |
38067196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 38042806 - 38042656
Alignment:
| Q |
242 |
tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggct-atgaaatgcccaaaga |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38042806 |
tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctaatgaaatgcccaaaga |
38042707 |
T |
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| Q |
341 |
atgggaaaataccaggggctgaaatctgatgttactctgttagtggttttc |
391 |
Q |
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| T |
38042706 |
atgggaaaataccaggtgctgaaagctgttgttactctgttagtggttttc |
38042656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 242 - 396
Target Start/End: Complemental strand, 38067153 - 38067006
Alignment:
| Q |
242 |
tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctatgaaatgcccaaagaa |
341 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
38067153 |
tcttgtgttttggttggttgatgaagaagagtgaagcaggttgttatatataggaagcttttaaatgctaaagttaa-------tgaaatgcccaaagaa |
38067061 |
T |
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| Q |
342 |
tgggaaaataccaggggctgaaatctgatgttactctgttagtggttttcttttc |
396 |
Q |
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| T |
38067060 |
tgggaaaataccaggggctgaaatctgatgttactctgttagtggttttcttttc |
38067006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 38019292 - 38019154
Alignment:
| Q |
20 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatcttttaatgcttccacaactgcaac |
119 |
Q |
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|||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38019292 |
aaaacgatctgacattatttttgacatgattttgaactgactttagggtatgattccatctgcatattccttgatcctttaatgcttccacaactgcaac |
38019193 |
T |
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| Q |
120 |
actgcctgcagctacccatgctctgcttgttgaactcat |
158 |
Q |
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| T |
38019192 |
actgcctgcagctacccatgctctgcttgttgaactcat |
38019154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 38044993 - 38044836
Alignment:
| Q |
20 |
aaaatgatctgacattgtttttaacatgattttgaactgattttagtgtatgattccatctgcatattccttgatcttttaatgcttccacaactgcaac |
119 |
Q |
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|||| ||||| ||||||||||||| ||||||||||| ||| ||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38044993 |
aaaacgatctcacattgtttttaaaatgattttgaagtgactttagggtaagattccatctgcatattccttgatctttcaatgcttcaacaactgcaac |
38044894 |
T |
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| Q |
120 |
actgcctgcagctacccatgctctgcttgttgaactcattttgattaatattgattct |
177 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
38044893 |
actgcctgctgctacccatgctctacttgttgaactcatcttgattaatattgattct |
38044836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 242 - 356
Target Start/End: Complemental strand, 38044793 - 38044678
Alignment:
| Q |
242 |
tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggct-atgaaatgcccaaaga |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38044793 |
tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctaatgaaatgcccaaaga |
38044694 |
T |
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| Q |
341 |
atgggaaaataccagg |
356 |
Q |
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|||||||||||||||| |
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| T |
38044693 |
atgggaaaataccagg |
38044678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 242 - 364
Target Start/End: Complemental strand, 38028166 - 38028051
Alignment:
| Q |
242 |
tcttgtgttttggttggttgatgaagaagagtgaaggaggttgttatatataggaagctttgaaatgctaaagttaagaggctatgaaatgcccaaagaa |
341 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38028166 |
tcttgtgttttggttggttgatgaagaagagtgaagcaggttgttatatataggaagctttgaaatgctaaagtta-------atgaaatgcccaaagaa |
38028074 |
T |
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| Q |
342 |
tgggaaaataccaggggctgaaa |
364 |
Q |
| |
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|||||||||||||| |||||||| |
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| T |
38028073 |
tgggaaaataccagtggctgaaa |
38028051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 38033850 - 38033801
Alignment:
| Q |
73 |
ttccatctgcatattccttgatcttttaatgcttccacaactgcaacact |
122 |
Q |
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|||||||||||||||||||||||||| || || ||||||||| ||||||| |
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| T |
38033850 |
ttccatctgcatattccttgatctttcaaagcctccacaactccaacact |
38033801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 42403850 - 42403806
Alignment:
| Q |
46 |
tgattttgaactgattttagtgtatgattccatctgcatattcct |
90 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
42403850 |
tgattttgaaccgactttagtgtatgattccatctgcatattcct |
42403806 |
T |
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