View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_19 (Length: 381)
Name: NF2655_low_19
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 11090655 - 11090325
Alignment:
| Q |
19 |
ccatcgagtaaataatcacattatggtagtttctcatggactgcatgagccagatcagacccctattccgattcaaccgattcaaaaagctgatctgatc |
118 |
Q |
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| T |
11090655 |
ccatcgagtaaataatcacattatggtagtttctcatggactgcatgagccagatcagacccctattccgattcaa---------aaagctgatctgatc |
11090565 |
T |
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| Q |
119 |
taattataatcacattggtttaacctattgaactaattattttttcttgacaatgcaacttattcaactagttagtgtgattacagtgtagatattaaag |
218 |
Q |
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| T |
11090564 |
taattataatcacattggtttaacctattgaactaattattttttcttgacaatgcaacttattcaactagttagtgtgattacagtgtagatattaaag |
11090465 |
T |
|
| Q |
219 |
tgatcctctaaatgagtctatggtggctatagaatagtatgacgttcttatagaagatacatgtacctacacacttaatctat--tatatatctaaattg |
316 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||| |
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| T |
11090464 |
tgatcctctaaatgagtctatggttgctata---------------------gaagatacatgtacctacacacttaatctattatatatatataatttg |
11090386 |
T |
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| Q |
317 |
tgatgtatcatttgcggaattaaacatattaaaacaagtagatataacacctttgctactc |
377 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11090385 |
tgatgtatcatttgcagaattaaacatattaaaacaagtagatataacacctttgcaactc |
11090325 |
T |
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