View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_22 (Length: 352)
Name: NF2655_low_22
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_22 |
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| [»] scaffold0002 (7 HSPs) |
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| [»] scaffold1869 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 269; Significance: 1e-150; HSPs: 7)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 334
Target Start/End: Complemental strand, 402274 - 401950
Alignment:
| Q |
10 |
aatatgaaataggtttataaatcatgttatattttgaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttcaa |
109 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
402274 |
aatacgaaataggttcttaaaacatgttatattttgaataagatttgtaggaaatgagcccttcaattgagttgagaaatatgacgaatcaatttttcaa |
402175 |
T |
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| Q |
110 |
atctcctaaccaccatagtgtgaagatgaaatggatgtagatcataataatttgattaagaatcttatgagtataaacatgtgaagctcatctcgtagac |
209 |
Q |
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|||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
402174 |
atctcctaacaaccatagtctgaacatgaaatggatgtagatcataataatttgattaagaatcttatgagtataaacatgtgaagctcatctcgtagac |
402075 |
T |
|
| Q |
210 |
cttccctgttaattatttggtgttattaaattaattaatatacatagaggaaatttggatgcatatttctccacgattgatcgatgcaaattaaaaatga |
309 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||||||| |
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| T |
402074 |
cttcctttttaattatttggtgttattaaattaattaatatacatagaggaaatttggatgcatatttctccaccattggttgatggaaattaaaaatga |
401975 |
T |
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| Q |
310 |
ttagataaacataagatgtaatggt |
334 |
Q |
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||||||||||||||||||||||||| |
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| T |
401974 |
ttagataaacataagatgtaatggt |
401950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 405687 - 405442
Alignment:
| Q |
17 |
aataggtttataaatcatgttatattttgaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttcaaatctcct |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
405687 |
aataggttcataaatcatgttatattttgaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttcaactctcct |
405588 |
T |
|
| Q |
117 |
aaccaccatagtgtgaagatgaaatggatgtagatcataataatttgattaagaatcttatgagtataaacatgtgaagctcatctcgtagaccttccct |
216 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
405587 |
aacaaccatagtgtgaacatgaaatggatgtagatcataataatttgattaataatcttatgagtataaacatgtgaagctcatctcgtagaccttcctt |
405488 |
T |
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| Q |
217 |
gttaattatttggtgttattaaattaattaatatacatagaggaaa |
262 |
Q |
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| T |
405487 |
attaattatttggtgttattaaattaattaatatacatagaggaaa |
405442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 402844 - 402718
Alignment:
| Q |
43 |
ttgaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttcaaatctcctaaccaccatagtgtgaagatgaaatg |
142 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| | ||||||||||||| |||| | |
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| T |
402844 |
ttgaatatgatttgtaggaaatgagaccctcaattgagttgagaaatatgagggttcaatttttcaaatctcctagcaaccatagtgtgaacatgaggtt |
402745 |
T |
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| Q |
143 |
gatgta-gatcataataatttgattaa |
168 |
Q |
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|||||| || |||||||||||||||| |
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| T |
402744 |
gatgtatcataataataatttgattaa |
402718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 247 - 317
Target Start/End: Complemental strand, 94764 - 94694
Alignment:
| Q |
247 |
atatacatagaggaaatttggatgcatatttctccacgattgatcgatgcaaattaaaaatgattagataa |
317 |
Q |
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| T |
94764 |
atatatatataggaaatttggatgaatatttctccacgattgatcgatggaaattaaaaatgattagataa |
94694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 406016 - 405916
Alignment:
| Q |
10 |
aatatgaaataggtttataaatcatgttatattttgaataagatttgtaggaaatgagcccctcaattgagttgagaaatatgacgaatcaatttttcaa |
109 |
Q |
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|||| |||||||||||| || |||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
406016 |
aatacgaaataggtttacaagtcatattttattt-gaatatgatttgtaggaaatgagcccctcaattgagttgagaaatatgacagttcaatttttgaa |
405918 |
T |
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| Q |
110 |
at |
111 |
Q |
| |
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|| |
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| T |
405917 |
at |
405916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 403014 - 402960
Alignment:
| Q |
277 |
tctccacgattgatcgatgcaaattaaaaatgattagataaacataagatgtaat |
331 |
Q |
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| T |
403014 |
tctccacgattgttcgatggaaattaaaaatgattagataagcataagatgtaat |
402960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 403229 - 403100
Alignment:
| Q |
10 |
aatatgaaataggtttataaatcatgttatattttgaataagatttgtaggaaatgagccc-----ctcaattgagttgagaa--atatgacgaatcaat |
102 |
Q |
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|||| |||||||||||||||||||| || || |||||||| ||||||| |||||||| ||| ||||||||||||||||| |||||||| | | | |
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| T |
403229 |
aatacgaaataggtttataaatcatatttta-tttgaatatgatttgttggaaatgaacccctcaactcaattgagttgagaaatatatgacggttaatt |
403131 |
T |
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| Q |
103 |
ttttcaaatctcctaaccaccatagtgtgaa |
133 |
Q |
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||||||| ||||||||| |||||||||||| |
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| T |
403130 |
ttttcaattctcctaacagccatagtgtgaa |
403100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1869 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1869
Description:
Target: scaffold1869; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 1113 - 1213
Alignment:
| Q |
234 |
attaaattaattaatatacatagaggaaatttggatgcatatttctccacgattgatcgatgcaaattaaaaatgattagataaacataagatgtaatgg |
333 |
Q |
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|||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1113 |
attaaattaattaatatatagagaggaaatttggatgcataattctccacgattgatcgatggaaattaaaaatgattagataaacataagatgtaatgg |
1212 |
T |
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| Q |
334 |
t |
334 |
Q |
| |
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| |
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|
| T |
1213 |
t |
1213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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