View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_28 (Length: 328)
Name: NF2655_low_28
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 6021156 - 6020866
Alignment:
| Q |
1 |
gtcatttcgatgataattaatattatagtgtaatatacaatgattttgtttacgcataaatataacatgttattaattactatgtccttgtcttgtaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
6021156 |
gtcatttcgatgataattaatattatagtgtaatatacaacgattttgtttacacataaatataacatgttattaattagtatgtcattgtcttgtaaat |
6021057 |
T |
|
| Q |
101 |
catgaatgtgtaaattattcattagtcttggcacctgctttggatagcctccccactacgatcattttctattgttttagagagaaaaatgaatggcaaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6021056 |
catgaatgtgtaaattatccattagtcttggcacctgctttggatagcctccccactacgatcattttctattgttttagagagaaaaatgaatggcaaa |
6020957 |
T |
|
| Q |
201 |
atattggctatctcttgtgttttttgcggggcccatatcaaaatcttctctccatttgtcttatccattgcactgcatgatcatgtgtagg |
291 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6020956 |
atattggctatctcttgtgttttttgcggggcccatgtcaaaatcttccctccatttgtcttatccattgcactgcatcatcatgtgtagg |
6020866 |
T |
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