View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2655_low_30 (Length: 325)
Name: NF2655_low_30
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_30 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 44882809 - 44883108
Alignment:
| Q |
10 |
attatactcgctgtgaagttctgttttgctgctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcaggtgctggggt |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44882809 |
attatacttgctgtgaagttctgttttgctgctggatgttgttgtctataggaaattgttttgaaacatctaatagtgctgctacagcaggtgctggggt |
44882908 |
T |
|
| Q |
110 |
catggattggtactgaggaggtgcatttgcatttgcaggctgctgttgtgtgtagtatacttgttcttgcgtagctccgcctccaccatattcataacca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44882909 |
catggattggtactgaggaggtgcatttgcatttgcgggctgctgttgtgtgtagtatacttgttcttgcgtagctccacctccaccatattcataacca |
44883008 |
T |
|
| Q |
210 |
taaatagtcttctgtggtggatgatgaatattttgagataaactcacgtattgctgctgatattgattagaacgaacttgaataaaagatggatttgatg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44883009 |
taaatagtcttctgtggtggatgatgaatattttgagataaactcacgtattgctgctgatattgattagaaagaacttgaataaaagatggatttgatg |
44883108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 245
Target Start/End: Complemental strand, 9019764 - 9019638
Alignment:
| Q |
107 |
ggtcatggattggtactgaggaggtgcatttgcatttgcaggctgctgttgtgtgtagtatacttgttcttgcgtagctccgcctccaccatattc---a |
203 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||| ||| ||||||||||||| | |
|
|
| T |
9019764 |
ggtcatagattggtactaaggaggtgcatttgcat------gctgctgttgtgggtagaatacttgttcttgcttag------ctccaccatattcataa |
9019677 |
T |
|
| Q |
204 |
taaccataaatagtcttctgtggtggatgatgaatattttga |
245 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
9019676 |
taaccataaaaag---gctgtggtggatgatgaatattttga |
9019638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 8978469 - 8978382
Alignment:
| Q |
51 |
ttgtctataggaaattgttttgaaacatctaatagtgctgctgcagcaggtgctggggtcatggattggtactgaggaggtgcatttg |
138 |
Q |
| |
|
|||| |||||||||||||||||||| ||| | | || ||| ||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
8978469 |
ttgtatataggaaattgttttgaaaaatcggacattgttgcagcagcgactgctgtggtcatggattggtactgagaaggtgcatttg |
8978382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 1253553 - 1253590
Alignment:
| Q |
148 |
gctgctgttgtgtgtagtatacttgttcttgcgtagct |
185 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1253553 |
gctgcttttgtgtgtagtatacttgttcttgcgtagct |
1253590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University