View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_35 (Length: 300)
Name: NF2655_low_35
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 46871983 - 46872104
Alignment:
| Q |
1 |
aacgcagccaaaccaattccaccaccacacaaaaactttcccaaaaacataccaaatcaggtatcaccacaaattcaaataatnnnnnnntaaataatac |
100 |
Q |
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| T |
46871983 |
aacgcagccaaaccaaatccaccaccacacaaaaactttcccaaaaacataccaaatcaggtatcaccacaaattcaaataat-aaaaaataaataatac |
46872081 |
T |
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| Q |
101 |
taatatcacaggcatgtatattt |
123 |
Q |
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| T |
46872082 |
taatatcacaggtatgtatattt |
46872104 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 46872231 - 46872266
Alignment:
| Q |
249 |
cttaccaaaaatacacacataagtgttgtgtgaact |
284 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
46872231 |
cttaccaaaaatacacacatcagtgttgtgtgaact |
46872266 |
T |
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