View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_38 (Length: 286)
Name: NF2655_low_38
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 271
Target Start/End: Original strand, 7289423 - 7289684
Alignment:
| Q |
10 |
acatcatcaaagaacaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgg |
109 |
Q |
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| T |
7289423 |
acatcatcaaagaacaatggttatgtcctaaaagggtatttagctgtttgtattggagaagaacttaagaggttcatcataccaccaactgaatatttgt |
7289522 |
T |
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| Q |
110 |
gtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttga |
209 |
Q |
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| T |
7289523 |
gtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgttttgaggattctttgtgaagtctctacttttga |
7289622 |
T |
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| Q |
210 |
gagtattttgaagatggttgaagatcatggaaagaataaggatattgttcaaacaagaatgt |
271 |
Q |
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| T |
7289623 |
gtgtattttgaagatggttgaagatcatggaaagaataaggatagtgttcaaacaagaatgt |
7289684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 1197156 - 1196918
Alignment:
| Q |
10 |
acatcatcaaagaacaatggttatgtcctaaaagggtattcagctgtttatattggagaagaacttaagaggttcatcataccaccaactgaatatttgg |
109 |
Q |
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| T |
1197156 |
acatcatcaaacaacaatggttctgttccaaaaggatatttagctgtttgtgttggagaagagcttaagaggttcatcatacca---actgaatatttgg |
1197060 |
T |
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| Q |
110 |
gtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttga |
209 |
Q |
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| T |
1197059 |
gtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgtgaagtctctacttttga |
1196960 |
T |
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| Q |
210 |
gagtattttgaagatggttgaagatcatggaaagaataagga |
251 |
Q |
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| T |
1196959 |
gagtattttgaagatggttgaagatcatggaaagaataagga |
1196918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 50471179 - 50471318
Alignment:
| Q |
93 |
accaactgaatatttgggtcatcaagcttttcagattcttttgagagaagctgaagaagaatttgggtttcaacaagctggtgtattgaggattccttgt |
192 |
Q |
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| T |
50471179 |
accaaccgagtatttggctcatcaagcctttcatatattactcagagaagctgaagaagaatttgggtttgaacaaactggtgttctgagaattccttgt |
50471278 |
T |
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| Q |
193 |
gaagtctctacttttgagagtattttgaagatggttgaag |
232 |
Q |
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| T |
50471279 |
gaagtttcagtgtttgagagtatcttgaagatggttgaag |
50471318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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