View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_39 (Length: 284)
Name: NF2655_low_39
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_39 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: scaffold0079 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 47979 - 48227
Alignment:
| Q |
20 |
aaagaaacaatatatatgtttagcattataccttcatgtaaatagcatcagcactaggaaccgacacgaacatgtctcctccaacatgggtgataccatc |
119 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47979 |
aaagaaacaatatatttgtttagcattataccttcatgtaaatagcatcagcactaggaactgacacgaacatgtctcctccaacatgggtgataccatc |
48078 |
T |
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| Q |
120 |
aaaattaggggccgttgaaaccacatgaggcaaatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgataccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48079 |
aaaattaggggccgttgaaaccacatgaggcaaatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgataccc |
48178 |
T |
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| Q |
220 |
ccaccaacatcaaccaaagacttaatttggttaaacccgtctttgtatc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48179 |
ccaccaacatcaaccaaagacttaatttggttaaacccgtctttgtatc |
48227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 268
Target Start/End: Complemental strand, 16344882 - 16344634
Alignment:
| Q |
20 |
aaagaaacaatatatatgtttagcattataccttcatgtaaatagcatcagcactaggaaccgacacgaacatgtctcctccaacatgggtgataccatc |
119 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16344882 |
aaagaaacaatatatttgtttagcattataccttcatgtaaatagcatcagcactaggaactgacacgaacatgtctcctccaacatgggtgataccatc |
16344783 |
T |
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| Q |
120 |
aaaattaggggccgttgaaaccacatgaggcaaatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgataccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16344782 |
aaaattaggggccgttgaaaccacatgaggcaaatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgataccc |
16344683 |
T |
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| Q |
220 |
ccaccaacatcaaccaaagacttaatttggttaaacccgtctttgtatc |
268 |
Q |
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| T |
16344682 |
ccaccaacatcaaccaaagacttaatttggttaaacccgtctttgtatc |
16344634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 35868 - 35645
Alignment:
| Q |
45 |
ttataccttcatgtaaatagcatcagcactaggaaccgacacgaacatgtctcctccaacatgggtgataccatcaaaattaggggccgttgaaaccaca |
144 |
Q |
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||||||||| ||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||| | || || || |||||||| ||| |
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| T |
35868 |
ttataccttgatgtaaatagcatcagcactaggaatagaaacaaacatgtctcctccaacatgggtgatgccatcatacttgggtgctgttgaaacaaca |
35769 |
T |
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| Q |
145 |
tgaggcaaatcaaagttaatagcttgaatgtgaggataagctctaacaatctcggagagagatcctccgatacccccaccaacatcaaccaaagacttaa |
244 |
Q |
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|||||||||||||| |||||| |||| || ||||| |||||| |||||||||| || | |||||||||||||| ||||||||||||||||| | | || |
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| T |
35768 |
tgaggcaaatcaaaattaataccttggatatgagggtaagctttaacaatctcagacatcgatcctccgataccgccaccaacatcaaccaatgtttgaa |
35669 |
T |
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| Q |
245 |
tttggttaaacccgtctttgtatc |
268 |
Q |
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|||||||||| || |||||||||| |
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| T |
35668 |
tttggttaaatccatctttgtatc |
35645 |
T |
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