View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_40 (Length: 282)
Name: NF2655_low_40
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 35 - 275
Target Start/End: Original strand, 1959040 - 1959280
Alignment:
| Q |
35 |
ttctttctcacattttctttgtgtatttattttgtcatggcttgtgttatccttcacacggccactgccactgccacttttctctttctttctaaatgga |
134 |
Q |
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| T |
1959040 |
ttctttctcacattttctttgtgtatttattttgtcatggcttgtgttatccttcacacggccactgccactgccacttttctctttctttctaaatgga |
1959139 |
T |
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| Q |
135 |
ttaatgtcatttgttatctttgttgatttcatgtgccataaaaatggttgaacatttctgcgtttgaaatcaaactctatacctcagggttagtgagagt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1959140 |
ttaatgtcatttgttatctttgttgatttcatgtgccataaaaatggttgaacatttctgcgtttgaaatcaaactctatacctcagggttagtgaaagt |
1959239 |
T |
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| Q |
235 |
gatgaagaaatgtaaagaaaagaaagtgatgatgatgtcca |
275 |
Q |
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| T |
1959240 |
gatgaagaaatgtaaagaaaagaaagtgatgttgatatcca |
1959280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 35 - 270
Target Start/End: Complemental strand, 2024493 - 2024263
Alignment:
| Q |
35 |
ttctttctcacattttcttt--gtgtatttattttgtcatggcttgtgttatccttcacacggccactgccactgccacttttctctttctttctaaatg |
132 |
Q |
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|||||||||| ||||||||| |||||||||||||||||| | ||||| | ||||||||||| ||||| ||| | | | ||||||||||| |||| |
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| T |
2024493 |
ttctttctcatattttctttttgtgtatttattttgtcatagtttgtgct-tccttcacacgcccacttccatttc------tttctttctttcttaatg |
2024401 |
T |
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| Q |
133 |
gattaatgtcatttgttatctttgttgatttcatgtgccataaaaatggttgaacatttctgcgtttgaaatcaaactctatacctcagggttagtgaga |
232 |
Q |
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| T |
2024400 |
gattaatgtcatttgctatctttgttgatttcatatgccctaaaaatggttgaacgtttctgcgtttgaaatcaaactctatacctcagggttagtgaga |
2024301 |
T |
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| Q |
233 |
gtgatgaagaaatgtaaagaaaagaaagtgatgatgat |
270 |
Q |
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| T |
2024300 |
gtgatgaggaaatgtaaagaaaagaaagtgatggtgat |
2024263 |
T |
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