View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2655_low_42 (Length: 250)
Name: NF2655_low_42
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_42 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 1327167 - 1326949
Alignment:
| Q |
16 |
atatatcaaaaacttcaaccccggctccctccgaccaacatcagtaaacgacctcaaaagcctcgagtatccatattggaaagaccattgagcttcatca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1327167 |
atatatcaaaaacttcaaccccggctccctccgaccaacatcagtaaacgacctcaaaagcctcgagtatccatattggaaagaccattgagcttcatca |
1327068 |
T |
|
| Q |
116 |
gatagattgatcgctgagaaacgtggatgcggattcaaagcggttgatacatcgccccaccaatccggattatttctataccaatcaattgtcatcttaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1327067 |
gatagattgatcgctgagaaacgtggatgcggattcaaagcggttgatacatcgccccaccaatccggattatttctataccaatcaattgtcatcttaa |
1326968 |
T |
|
| Q |
216 |
gtccttcctcccaagttgt |
234 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1326967 |
gtccttcctcccaagttgt |
1326949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University