View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2655_low_53 (Length: 211)
Name: NF2655_low_53
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 51360403 - 51360573
Alignment:
| Q |
24 |
agtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcatggg |
123 |
Q |
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| T |
51360403 |
agtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcatggg |
51360502 |
T |
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| Q |
124 |
attgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaatgtcttgagtaagt |
194 |
Q |
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| T |
51360503 |
attgaatcacaagtaaggcgtatccctgcaattcaaaaaatactaacatcaagtcaatgtcttgagtaagt |
51360573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 51351034 - 51351145
Alignment:
| Q |
24 |
agtgcaagcaagtatattgaagcgtagaagagtaaagcttttgtgccatgtaaacaactcttttttccacatagttctggctgaagtttctcatcatggg |
123 |
Q |
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||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||| | |||||||| |||| |||||||||||||||| |||||| |
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| T |
51351034 |
agtgcaagcaagtatatcgaagcgtagaagaacaaagcttttgtgacatgcaaacaactttgttttccac--agttgtggctgaagtttctcagcatggg |
51351131 |
T |
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| Q |
124 |
attgaatcacaagt |
137 |
Q |
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|||||||||||||| |
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| T |
51351132 |
attgaatcacaagt |
51351145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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