View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2655_low_8 (Length: 496)
Name: NF2655_low_8
Description: NF2655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2655_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 10336822 - 10336542
Alignment:
| Q |
19 |
gtccctaattacttcttcctcatgccctacaagaaaaatatttcacatataaaatcataattcattttatttaatagataannnnnnnnnaatgatattt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10336822 |
gtccctaattacttcttcctcatgccctacaagaaaaatatttcacatataaaatcataattcattttatttaatagataatttttttt-aatgatattt |
10336724 |
T |
|
| Q |
119 |
aatcccattaaaaagatagagnnnnnnn---gctactaaacaaagaactattggaaaatgttcaccaaccggccgtcagcttagcttaggaaggtttgca |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336723 |
aatcccattaaaaagatagagaaaaaaaaaagctactaaacaaagaactattggaaaatgttcaccaaccggccgtcagcttagcttaggaaggtttgca |
10336624 |
T |
|
| Q |
216 |
caatatatactgccggagttcaaaccgcgacacttattcactttaaaaatatgaatttctaaccaataaactatttgatagg |
297 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10336623 |
taatatatattgccagagttcaaaccgcgacacttattcactataaaaatatgaatttctaaccaataaactatttgatagg |
10336542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 308 - 492
Target Start/End: Complemental strand, 10336110 - 10335926
Alignment:
| Q |
308 |
ttaatgttcaccaacctgaagaaataagacgtgacaagagatcttgaccaccaacaagctcctctccttttacattcatcttcttcttcctttctaaaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10336110 |
ttaatgttcaccaacctgaagaaataagacgtgacaagagatcttgaccaccaacaagctcctctccttttacattcatcatcttcttcctttctaaaat |
10336011 |
T |
|
| Q |
408 |
catttccatgacaagtatcttaacctccttaactgcatctctaagcctcctttctgatccaactccaagccacttcttctctctc |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
10336010 |
catttccatgacaagtatcttaacctccttaactgcatctctaagcctcctttccgatccaactccaagccacttcttcactctc |
10335926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 19208900 - 19208853
Alignment:
| Q |
246 |
cacttattcactttaaaaatatgaatttctaaccaataaactatttga |
293 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |||||| |
|
|
| T |
19208900 |
cacttattcactttaaaaatgtgaatttctaaccactaaaccatttga |
19208853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 37318561 - 37318519
Alignment:
| Q |
246 |
cacttattcactttaaaaatatgaatttctaaccaataaacta |
288 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
37318561 |
cacttattcactttaaaaaaatgaatttttaaccaacaaacta |
37318519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 2710584 - 2710548
Alignment:
| Q |
249 |
ttattcactttaaaaatatgaatttctaaccaataaa |
285 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
2710584 |
ttattcactttaaaaaaatgaatttctaaccactaaa |
2710548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University