View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2656_low_1 (Length: 930)
Name: NF2656_low_1
Description: NF2656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2656_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 300 - 918
Target Start/End: Complemental strand, 32713752 - 32713134
Alignment:
| Q |
300 |
acaacaggtccaattttttgcagcagacttggaggaatcgattaatattaatatgagcatagagttggggcaggaaggtactgtgacatgggtagttttc |
399 |
Q |
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| T |
32713752 |
acaacaggtccaattttttgcagcagacttggaggaatcgattaatattaatatgagcatagagttggggcaggaaggtactgcgacatgggtagttttc |
32713653 |
T |
|
| Q |
400 |
tgggaaacagcttgtcatgcgatgtggaattggagaaacaaaacggttcaagatgcgacttttgtgtttcccattaaaccgtggatggataatagcactt |
499 |
Q |
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| T |
32713652 |
tgggaaacagcttgtcatgcgatgtggaattggagaaacaaaatggttcaagatgagacttttgtgttgcccattaaaccgtggatggataatagcactt |
32713553 |
T |
|
| Q |
500 |
tggtaatggagaatattaggtgacaacctccggcgatgggatggattcggctaaatttgggtagagccactagaggtaatagtatgtctggttgcggagg |
599 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32713552 |
tggtaatggagaatattaggtgacaacctctggtgatgggatggattcggctaaatattggtggagccactagaggtaatagtatgtctggttgcggagg |
32713453 |
T |
|
| Q |
600 |
aattttgcgtaatgatagaggtgagtggacttgtggattttcaaagtgtatgggagtgtgtactatatttgtagcagagttctggagagttttcaaagat |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
32713452 |
aattttgcgtaatgatagaggtgagtggacttgtggattttcaaagtgtatgggagtgtgtagtatatttgtagcagagttctggagagttttcaaaggt |
32713353 |
T |
|
| Q |
700 |
ttaaagatagctagagagagtggctttcataaattggagcttcatgtagattcaagactagtggtgtctaatcttgagtatggtaacgagggtcagctgt |
799 |
Q |
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| T |
32713352 |
ttaaagatagctagagagagtggctttcataaattggagcttcatgtagattcaagactagtggtgtctaatcttgagtatggtaacgagggtcagctgt |
32713253 |
T |
|
| Q |
800 |
tgggtggagtctgttaatcaatattaaaagattattggagctaaattgggaagtttgaatttgtcatacctagaaaagtgaattcttgtgcggatgctat |
899 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32713252 |
tgggtggagtctgttaatcaatattaaaagattattggagctaaattgggaagtttgaatttgtcatacctagaaaagcgaattcttgtgcggatgctat |
32713153 |
T |
|
| Q |
900 |
aggaatttggcttgtgatg |
918 |
Q |
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||||||||||||||||||| |
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| T |
32713152 |
aggaatttggcttgtgatg |
32713134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 32714061 - 32713776
Alignment:
| Q |
18 |
gttagaaatggtgaaagtgtcaaagtttgggagcattgttgggtagaggaagggctgtgaattgcagaactgggaattaatattctagagccataagtaa |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32714061 |
gttagatatggtgaaagtgtcaaagtttgggagcattgttgggtagaggaagggccgcgaattgcagaactgggaattaatattctagagccataagtaa |
32713962 |
T |
|
| Q |
118 |
ttgtatggtgacagaccttggtaatgagaatagctatcggtccataaatgaattgctgcaatggttgccaagtgaaataattaataggacggcatcaatt |
217 |
Q |
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| T |
32713961 |
ttgtatggtgacagaccttggtaatgagaatagctatcggtccataaatgaattgctgcaatggttgccaagtgaaataattaataggacggcatcaatt |
32713862 |
T |
|
| Q |
218 |
ccaacaccgcatgaagattgtggaatggatatgtgtgtttgaccgggttctaaaagtggagaattttcaattgcttatacttacaa |
303 |
Q |
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| T |
32713861 |
ccaacaccgcatgaagattatggaatggatatgtgtgtttgaccgggttctaaaagtggagaattttcaattgcttatacttacaa |
32713776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 508 - 771
Target Start/End: Original strand, 14219796 - 14220062
Alignment:
| Q |
508 |
gagaatattaggtgacaacctccggcgatgggatggattcggctaaatttgggtagagccactagaggtaatagtatgtctggttgcggaggaattttgc |
607 |
Q |
| |
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||||| ||||||||| ||| || || || |||||| |||| |||||| || | |||| ||||||||||||||| |||| | ||| | | ||||||| |
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| T |
14219796 |
gagaacattaggtgaaaactgccagcaataggatgggttcgcctaaatatgaatggagctactagaggtaatagtgtgtccgattgtgtaagaatttttt |
14219895 |
T |
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| Q |
608 |
gtaatgatagaggtgagtggacttgtggattttcaaagtgtatgggagtgtgtactatatttgtagcagagttctggaga---gttttcaaagatttaaa |
704 |
Q |
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||||||||||||||||||| | |||||||||||||||| | ||||||||||| | | |||||||||||||| || || |||| |||| |||||| |
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| T |
14219896 |
gtaatgatagaggtgagtgaatttgtggattttcaaagctttagggagtgtgtagtgtgtttgtagcagagttatgtggaattttttttaaaggtttaaa |
14219995 |
T |
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| Q |
705 |
gatagctagagagagtggctttcataaattggagcttcatgtagattcaagactagtggtgtctaat |
771 |
Q |
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|||||||| |||| |||| ||| ||||| |||||||| || |||||| || | |||||||||||||| |
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| T |
14219996 |
gatagctatagagcgtggattttataaaatggagcttaatttagatttaaaagtagtggtgtctaat |
14220062 |
T |
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