View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2656_low_5 (Length: 224)
Name: NF2656_low_5
Description: NF2656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2656_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 4686152 - 4686346
Alignment:
| Q |
18 |
aatacaaggttgaaaaagaagcttttggggaaacaccgtaaagatcaacaacaacaagcacgtaatagaggaaataatggtgctattgttaagcaagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686152 |
aatacaaggttgaaaaagaagcttttggggaaacaccgtaaagatcaacaacaacaagcacgtaatagaggaaataatggtgctattgttaagcaagaaa |
4686251 |
T |
|
| Q |
118 |
gcaataataatagagtgatgagtagtaatgaattttccttatcaaatttggttcaagaacaaccatatttaccacatgtcatgcaacctttgcta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4686252 |
gcaataataatagagtgatgagtagtaatgaattttccttatcaaatttggttcaagaacaaccatatttaccacatgtcatgcaacctttgcta |
4686346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 47846572 - 47846516
Alignment:
| Q |
28 |
tgaaaaagaagcttttggggaaacaccgtaaagatcaacaacaacaagcacgtaata |
84 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| |||||| |||||||||||||| |
|
|
| T |
47846572 |
tgaaaaagaagctttttgggaagcatcgtaaagaacaacaattacaagcacgtaata |
47846516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University