View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2656_low_6 (Length: 213)
Name: NF2656_low_6
Description: NF2656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2656_low_6 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 28507618 - 28507506
Alignment:
| Q |
84 |
ttggagtatgagcttactgtgaaattgtataaaattcattaagtatgatctagatgtgtttttccataacatgagagtaattttgcttccctgatctgct |
183 |
Q |
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| T |
28507618 |
ttggagtatgagctgactgtgaaattgtataacattcattcagtatgatctagatgtgtttttccataacatgagagtaattttgcttccctgatctgct |
28507519 |
T |
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| Q |
184 |
tttgtttcttcat |
196 |
Q |
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| T |
28507518 |
tgtgtttcttcat |
28507506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 27381806 - 27381920
Alignment:
| Q |
69 |
ttggctttgctaatattggagtatgagcttactgtgaaattgtataaaattcattaagtatgatctagatgtgtttttccataacatgagagtaattttg |
168 |
Q |
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|||||||||||||||||||||||||| || | |||||||||| | ||| | ||| | ||||| |||| |||||| || |||||||||||| |||||| |
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| T |
27381806 |
ttggctttgctaatattggagtatgatctgattgtgaaattgaaataaacttatttaatatgagctagctgtgttctttcataacatgagatctattttg |
27381905 |
T |
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| Q |
169 |
cttccctgatctgct |
183 |
Q |
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| T |
27381906 |
cttacttgatctgct |
27381920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 49938 - 49828
Alignment:
| Q |
73 |
ctttgctaatattggagtatgagcttactgtgaaattgtataaaattcattaagtatgatctagatgtgtttttccataacatgagagtaattttgcttc |
172 |
Q |
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| T |
49938 |
ctttgttaacattggagtatgaaatgcctgtgaaattgtaataaacttatttagtatgagctagctgtattctttcataacatgagatccattttgcttc |
49839 |
T |
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| Q |
173 |
cctgatctgct |
183 |
Q |
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| T |
49838 |
cttgatctgct |
49828 |
T |
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