View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2657_high_5 (Length: 251)
Name: NF2657_high_5
Description: NF2657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2657_high_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 24615934 - 24616155
Alignment:
| Q |
30 |
ttttccacataacgtcggtaacatgttgcatactctgcagctgtccagtgctgacctgctgcatcaggtgctattcggccagcaggtgtatttcacgaag |
129 |
Q |
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| T |
24615934 |
ttttccacataacatcggtaacatgttgcatactctgcagctgtccagtgctgacctgctgcatcaggtgctattcggccagcaggtgtatttcacgaag |
24616033 |
T |
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| Q |
130 |
ctcgacttggttttctgtttcgatagagtcattctagactgtgttgttttgctgcggccacacactccagatttgcattggttagtttgccatcttgctt |
229 |
Q |
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| T |
24616034 |
ctcgacttggttttctgtttcgatagagtcattctagactgtgttgttttgctgcggccacacacttcagatttgcattggttagtttgccatcttgctt |
24616133 |
T |
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| Q |
230 |
tgtccagattctgtaggcggtt |
251 |
Q |
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| T |
24616134 |
tgtccagattctgtaggcggtt |
24616155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 24114833 - 24114615
Alignment:
| Q |
30 |
ttttccacataacgtcggtaacatgttgcatactctgcagctgtccagtgctgacctgctgcatcaggtgctattcggccagcaggtgtatttcacgaag |
129 |
Q |
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| T |
24114833 |
ttttccacataacatcagtaacatgttgcatactctgcggctgtccagtgatgacctgctgcatcaggtgctattcggccagcaggtgtatttcacgaag |
24114734 |
T |
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| Q |
130 |
ctcgacttggttttctgtttcgatagagtcattctagactgtgttgttttgctgcggccacacactccagatttgcattggttagtttgccatcttgct- |
228 |
Q |
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| T |
24114733 |
ctccacttggttttctatttcgatagagtcatttcagactgtgttgtttttctgttgtcacacactcctgatttgcattggtcagtttgccacattgcta |
24114634 |
T |
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| Q |
229 |
ttgtccagattctgtaggc |
247 |
Q |
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| T |
24114633 |
ttgtccagattctgtaggc |
24114615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 24115462 - 24115242
Alignment:
| Q |
30 |
ttttccacataacgtcggtaacatgttgcatactctgcagctgtccagtgctgacctgctgcatcaggtgctattcggccagcaggtgtatttcacgaag |
129 |
Q |
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||||||||| ||| | ||| ||||||||||| ||||| ||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
24115462 |
ttttccacacaacataagtagcatgttgcatattctgccgctgtccagggctaaactgctgcatcgggtgctattcggccagcaggtgtatttcatgaag |
24115363 |
T |
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| Q |
130 |
ctcgacttggttttctgtttcgatagagtcattctagactgtgttgttttgctgcggccacacactccagatttgcattggttagtttgccatcttgct- |
228 |
Q |
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||| |||||||||||||||||||| |||||||| |||||||||||||| || | |||||||| ||||||||| ||||||| |||||| | |||||| |
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| T |
24115362 |
ctccacttggttttctgtttcgat--agtcattccagactgtgttgtttatcttctgccacacattccagatttccattggtcagtttgtcgccttgcta |
24115265 |
T |
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| Q |
229 |
ttgtccagattctgtaggcggtt |
251 |
Q |
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|||||||| |||| |||||||| |
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| T |
24115264 |
ctgtccagaatctgcaggcggtt |
24115242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 24108140 - 24107977
Alignment:
| Q |
29 |
attttccacataacgtcggtaacatgttgcatactctgcagctgtccagtgctgacctgctgcatcaggtgctattcggccagcaggtgtatttcacgaa |
128 |
Q |
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|||||||||| ||| || ||| |||||||||||||||| | ||||||||||| |||||||| | ||||||| ||||| |||||||||||||||||| || |
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| T |
24108140 |
attttccacacaacatcagtagcatgttgcatactctgatgttgtccagtgcttacctgctgtaccaggtgccattcgtccagcaggtgtatttcacaaa |
24108041 |
T |
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| Q |
129 |
gctcgacttggttttctgtttcgatagagtcattctagactgtgttgttttgctgcggccacac |
192 |
Q |
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| T |
24108040 |
gctccacttggttttctgtttcaatagagtcattccagactgtgtagtttttctgctgccacac |
24107977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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