View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2657_low_1 (Length: 527)

Name: NF2657_low_1
Description: NF2657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2657_low_1
NF2657_low_1
[»] chr5 (17 HSPs)
chr5 (253-499)||(38220798-38221036)
chr5 (335-496)||(38186145-38186306)
chr5 (335-496)||(38212051-38212212)
chr5 (162-260)||(38178476-38178574)
chr5 (162-260)||(38205700-38205798)
chr5 (164-245)||(38221020-38221101)
chr5 (164-245)||(38156691-38156772)
chr5 (253-460)||(38156510-38156707)
chr5 (462-499)||(38156439-38156476)
chr5 (395-460)||(38452419-38452484)
chr5 (334-428)||(38444050-38444144)
chr5 (395-460)||(38170426-38170491)
chr5 (395-460)||(38182110-38182175)
chr5 (395-460)||(38188956-38189021)
chr5 (395-460)||(38209336-38209401)
chr5 (395-460)||(38216181-38216246)
chr5 (85-136)||(26032753-26032807)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 253 - 499
Target Start/End: Complemental strand, 38221036 - 38220798
Alignment:
Q  253 aaatttcacttccataatagtgaccatttaccaatttcttttaacttccataacaaacataggtacatccatagagcagtaaaatttcacttgggtaaaa 352  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38221036 aaatttcactttcataatagtgaccatt-accaatttcttttaacttccataacaaacataggtacttccatagagcagtaaaatttcacttgggtaaaa 38220938  T
Q  353 tacattgatttcatttgttttctgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagaca 452  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  38220937 tacattgatttcatttgttttctgttaattttagatatacac--atattttatcaaccaaatgcatattgttaatgacc-----ataataatattagaca 38220845  T
Q  453 tgacaatagaaagcaagtaaaatataacaaacatagatgcttaacat 499  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  38220844 cgacaatagaaagcaagtaaaatataacaaacatagatgcttaacat 38220798  T

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Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 335 - 496
Target Start/End: Complemental strand, 38186306 - 38186145
Alignment:
Q  335 aatttcacttgggtaaaatacattgatttcatttgttttctgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatgaccatc 434  Q
    ||||||||||   ||| |||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  38186306 aatttcacttccttaacatacattggtatcatttgttatgtgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatgactatt 38186207  T
Q  435 ctataataatattagacatgacaatagaaagcaagtaaaatataacaaacatagatgcttaa 496  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38186206 gtataataatattagacatgacaatagaaagcaagtaaaatataacaaacatagatgcttaa 38186145  T

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Target: chr5; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 335 - 496
Target Start/End: Original strand, 38212051 - 38212212
Alignment:
Q  335 aatttcacttgggtaaaatacattgatttcatttgttttctgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatgaccatc 434  Q
    ||||||||||   ||| |||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  38212051 aatttcacttccttaacatacattggtatcatttgttatgtgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatgactatt 38212150  T
Q  435 ctataataatattagacatgacaatagaaagcaagtaaaatataacaaacatagatgcttaa 496  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38212151 gtataataatattagacatgacaatagaaagcaagtaaaatataacaaacatagatgcttaa 38212212  T

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Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 38178476 - 38178574
Alignment:
Q  162 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataaagcaccaaaatttca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38178476 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataaagcaccaaaatttca 38178574  T

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Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 38205700 - 38205798
Alignment:
Q  162 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataaagcaccaaaatttca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38205700 tctagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataaagcaccaaaatttca 38205798  T

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Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 38221101 - 38221020
Alignment:
Q  164 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38221101 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataa 38221020  T

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Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 38156772 - 38156691
Alignment:
Q  164 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcactttcataa 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38156772 tagttaactgaaggaagttattaaagacaggaggttttgaatcatgaagctgtcatctgttaatgaaatttcacttccataa 38156691  T

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Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 253 - 460
Target Start/End: Complemental strand, 38156707 - 38156510
Alignment:
Q  253 aaatttcacttccataatagtgaccatttaccaatttcttttaacttccataacaaacataggtacatccatagagcagtaaaatttcacttgggtaaaa 352  Q
    ||||||||||||||||||||||||||||||||||       | ||||||||||||||||||          |||||||||||||||| ||||  |||  |    
T  38156707 aaatttcacttccataatagtgaccatttaccaaaaaaaaattacttccataacaaacata----------tagagcagtaaaattttacttccgtatca 38156618  T
Q  353 tacattgatttcatttgttttctgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagaca 452  Q
    ||||||||||||||||||| ||||||||||| | ||| | ||||||||||||| ||||||||  | |||||||||| ||||  | ||| |||||||||||    
T  38156617 tacattgatttcatttgttatctgttaatttcaaatacaaacaaatattttattaaccaaatttaaattgttaatggccattgtgtaacaatattagaca 38156518  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 499
Target Start/End: Complemental strand, 38156476 - 38156439
Alignment:
Q  462 aaagcaagtaaaatataacaaacatagatgcttaacat 499  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  38156476 aaagcaagtaaaataaaacaaacatagatgcttaacat 38156439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 38452419 - 38452484
Alignment:
Q  395 aaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagacatgacaata 460  Q
    ||||||||||||||||||||  | |||||||||| ||||  ||||| ||||||||||| |||||||    
T  38452419 aaatattttatcaaccaaattaaaattgttaatggccattgtataacaatattagacaagacaata 38452484  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 428
Target Start/End: Complemental strand, 38444144 - 38444050
Alignment:
Q  334 aaatttcacttgggtaaaatacattgatttcatttgttttctgttaattttagatatacacaaatattttatcaaccaaatgcatattgttaatg 428  Q
    |||||||||||   ||| || ||||||||||||||||| | ||||||||| | ||||| ||| | | |||||||||||||| || |||| |||||    
T  38444144 aaatttcacttccataacatgcattgatttcatttgttatgtgttaatttaaaatataaacacaaaatttatcaaccaaattcaaattgctaatg 38444050  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 38170491 - 38170426
Alignment:
Q  395 aaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagacatgacaata 460  Q
    ||||||||||||||||||||  | |||||||||| ||||  | ||| ||||||||||| |||||||    
T  38170491 aaatattttatcaaccaaattaaaattgttaatggccattgtgtaacaatattagacaagacaata 38170426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 38182110 - 38182175
Alignment:
Q  395 aaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagacatgacaata 460  Q
    ||||||||||||||||||||  | |||||||||| ||||  | ||| ||||||||||| |||||||    
T  38182110 aaatattttatcaaccaaattaaaattgttaatggccattgtgtaacaatattagacaagacaata 38182175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 38189021 - 38188956
Alignment:
Q  395 aaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagacatgacaata 460  Q
    ||||||||||||||||||||  | |||||||||| ||||  | ||| ||||||||||| |||||||    
T  38189021 aaatattttatcaaccaaattaaaattgttaatggccattgtgtaacaatattagacaagacaata 38188956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 38209336 - 38209401
Alignment:
Q  395 aaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagacatgacaata 460  Q
    ||||||||||||||||||||  | |||||||||| ||||  | ||| ||||||||||| |||||||    
T  38209336 aaatattttatcaaccaaattaaaattgttaatggccattgtgtaacaatattagacaagacaata 38209401  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 38216246 - 38216181
Alignment:
Q  395 aaatattttatcaaccaaatgcatattgttaatgaccatcctataataatattagacatgacaata 460  Q
    ||||||||||||||||||||  | |||||||||| ||||  | ||| ||||||||||| |||||||    
T  38216246 aaatattttatcaaccaaattaaaattgttaatggccattgtgtaacaatattagacaagacaata 38216181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 26032753 - 26032807
Alignment:
Q  85 ttcttccctttttca---acgaaattggtctcagacaaatgcacatgcctagcat 136  Q
    |||||||||||||||   |||||||| ||||||||||||| |||| |||||||||    
T  26032753 ttcttccctttttcatcaacgaaatttgtctcagacaaatacacacgcctagcat 26032807  T

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