View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2657_low_12 (Length: 208)
Name: NF2657_low_12
Description: NF2657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2657_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 37704454 - 37704515
Alignment:
| Q |
5 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatattgtt |
66 |
Q |
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| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
37704515 |
T |
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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 37698636 - 37698698
Alignment:
| Q |
5 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatattgttg |
67 |
Q |
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| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgttg |
37698698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 37698974 - 37699035
Alignment:
| Q |
6 |
ccaaaaaggttgacttattagattgtttgcaa--attgagtctacgtattcccttatattgt |
65 |
Q |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgt |
37699035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 37437520 - 37437573
Alignment:
| Q |
5 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattccctt |
58 |
Q |
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| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattccctt |
37437573 |
T |
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