View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2657_low_2 (Length: 468)

Name: NF2657_low_2
Description: NF2657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2657_low_2
NF2657_low_2
[»] chr8 (5 HSPs)
chr8 (76-454)||(25890957-25891335)
chr8 (76-128)||(18309115-18309167)
chr8 (204-454)||(37718866-37719116)
chr8 (378-441)||(42649412-42649475)
chr8 (374-454)||(4310705-4310785)
[»] chr7 (13 HSPs)
chr7 (76-267)||(17506963-17507154)
chr7 (76-267)||(17546060-17546251)
chr7 (263-454)||(17504428-17504619)
chr7 (263-454)||(17548595-17548786)
chr7 (95-353)||(15645127-15645385)
chr7 (204-454)||(551424-551674)
chr7 (386-454)||(6343511-6343579)
chr7 (361-437)||(45165447-45165523)
chr7 (374-437)||(39694660-39694723)
chr7 (392-442)||(29557447-29557497)
chr7 (95-164)||(45976574-45976643)
chr7 (201-269)||(8771450-8771518)
chr7 (240-280)||(39694526-39694566)
[»] chr3 (4 HSPs)
chr3 (117-454)||(14853834-14854171)
chr3 (195-269)||(45684186-45684260)
chr3 (234-283)||(17700285-17700334)
chr3 (234-283)||(53941368-53941417)
[»] chr6 (6 HSPs)
chr6 (95-454)||(7956539-7956882)
chr6 (242-454)||(18588409-18588621)
chr6 (374-454)||(15602513-15602593)
chr6 (182-280)||(15602321-15602419)
chr6 (236-280)||(14528424-14528468)
chr6 (235-283)||(26513774-26513822)
[»] chr1 (4 HSPs)
chr1 (76-172)||(39584909-39585005)
chr1 (374-454)||(30712750-30712830)
chr1 (201-279)||(9991072-9991150)
chr1 (369-416)||(9991241-9991292)
[»] chr4 (5 HSPs)
chr4 (374-453)||(54684799-54684878)
chr4 (374-454)||(40688256-40688336)
chr4 (361-437)||(19163065-19163141)
chr4 (195-269)||(46639046-46639120)
chr4 (234-283)||(30821779-30821828)
[»] scaffold0024 (1 HSPs)
scaffold0024 (341-414)||(87113-87186)
[»] chr2 (6 HSPs)
chr2 (372-454)||(44029077-44029159)
chr2 (242-446)||(1468053-1468257)
chr2 (374-454)||(6727648-6727728)
chr2 (374-437)||(2207710-2207773)
chr2 (195-269)||(28400606-28400680)
chr2 (240-280)||(2207867-2207907)
[»] chr5 (4 HSPs)
chr5 (111-167)||(32239704-32239760)
chr5 (374-454)||(36255968-36256048)
chr5 (201-269)||(3168581-3168649)
chr5 (234-283)||(9724723-9724772)
[»] scaffold0351 (1 HSPs)
scaffold0351 (361-416)||(12901-12956)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 76 - 454
Target Start/End: Original strand, 25890957 - 25891335
Alignment:
Q  76 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 175  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||    
T  25890957 gcaccagagaccacagctccccaaagcaagaacaagagagaaacaaatgacgagcatcctccacctggccacaccccgaaatacacaaagaatcggccac 25891056  T
Q  176 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgc 275  Q
     ||||| ||||||||||||||||  ||||||||||||||||  ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  25891057 tttaagtataccacgtgatgccaaattagatttagtaggtaggcgatcacggagcagtcgccatgcaaagattgacacctttagaggaacctgattatgc 25891156  T
Q  276 caaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaacc 375  Q
    ||||  |||||  |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||    
T  25891157 caaattaggtcggcaacctgagtaacctgcggtacctcctgagttgtgagcatataatacacagaacggccagaataaacgcctgagggatctggtaacc 25891256  T
Q  376 actgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25891257 actgccacacatcataagaaagagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctc 25891335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 18309167 - 18309115
Alignment:
Q  76 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 128  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18309167 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgacta 18309115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 454
Target Start/End: Original strand, 37718866 - 37719116
Alignment:
Q  204 gatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacct 303  Q
    ||||| |||||||| ||||||||||| || ||||| ||||||||||||||||| |  |||||||| ||||||| ||  |  ||  ||  |||   |||||    
T  37718866 gatttggtaggtaagcgatcacggagcagccgccaagcaaaaattgacacctttaagggaacctgtttatgcctaattaaatcggcattctgcaaaacct 37718965  T
Q  304 gcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctg 403  Q
    |    | |||||||| ||||||||||| ||||||   | ||||||||||  |  | |||||  | |||||||| ||||||||| |||| ||||||| |||    
T  37718966 gaaaagtctcctgagttgtgagcatatcatacactccatgaacagagtagccttcggaagggcccggtaaccagtgccaaacaccatacgaaagaggctg 37719065  T
Q  404 caaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||||| |   ||||| |||| ||||||| ||||||||||||||||    
T  37719066 caaagaaacatcataaaataataaccgacactccgctaaaagatcctcctc 37719116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 42649412 - 42649475
Alignment:
Q  378 tgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctcta 441  Q
    ||||| |||||||||||||||| |||||||||||||| |   | ||| ||||||||||||||||    
T  42649412 tgccacacatcataagaaagaggctgcaaagaaacatcagcaagtaataacctacactcctcta 42649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 4310785 - 4310705
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||| ||||||||||||| || ||||||||||| ||||   | ||| |||||||||||| | | ||| ||||||||    
T  4310785 ccactgccacacatcataagaaataggctgcaaagaaatattagcaagtaataacctacactccgcaagaagctcctcctc 4310705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 76 - 267
Target Start/End: Complemental strand, 17507154 - 17506963
Alignment:
Q  76 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 175  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17507154 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17507055  T
Q  176 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacct 267  Q
    |||||| ||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  17507054 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 17546060 - 17546251
Alignment:
Q  76 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcac 175  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  17546060 gcaccagagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccacaccccgaaatacaccaagaatcggtcac 17546159  T
Q  176 attaagaataccacgtgatgccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacct 267  Q
    |||||| ||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  17546160 attaagtataccacgtgatgccagattagatttagtaggtatgcgatcacggagcagtcgccacgcaaatattgacacctttagaggaacct 17546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 263 - 454
Target Start/End: Complemental strand, 17504619 - 17504428
Alignment:
Q  263 aacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 362  Q
    |||||||||||||||||  || ||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17504619 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17504520  T
Q  363 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17504519 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctc 17504428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 263 - 454
Target Start/End: Original strand, 17548595 - 17548786
Alignment:
Q  263 aacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 362  Q
    |||||||||||||||||  || ||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17548595 aacctgattatgccaaattagatcgtcaacctgagtaacctgcggtacctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaa 17548694  T
Q  363 ggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17548695 ggctctggtaaccactgccatacatcataagaaatagcctgcaaagaaacattaagtaataacatcctacactcctctaaaagatcctcctc 17548786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 95 - 353
Target Start/End: Original strand, 15645127 - 15645385
Alignment:
Q  95 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgat 194  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  ||||||||||||    
T  15645127 cccaaagcaaggacaagagaaaaacaaatgatgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgtgat 15645226  T
Q  195 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacct 294  Q
    |||| ||||||||||||||| |    ||||||||| || ||||| ||||| | ||||||||| || |||| ||| ||||||||||  || || | | |||    
T  15645227 gccaagttagatttagtaggaaggtaatcacggagcagccgccaagcaaagactgacacctttagtggaatctgtttatgccaaattagatctaaatcct 15645326  T
Q  295 gattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaa 353  Q
    || |||||||| || |||| |||| ||||  ||||  |||||||||||||||| |||||    
T  15645327 gagtaacctgcagtacctcgtgagttgtggtcataacatacacagaacgaacatagtaa 15645385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 204 - 454
Target Start/End: Complemental strand, 551674 - 551424
Alignment:
Q  204 gatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacct 303  Q
    ||||| ||||| || ||||||||||  || ||||| ||||||||||||||||| | ||||||||| ||||||||||  |  || |||  ||    |||||    
T  551674 gatttggtaggcaagcgatcacggatcagccgccaagcaaaaattgacacctttaaaggaacctgtttatgccaaattaaatcaacattctacaaaacct 551575  T
Q  304 gcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctg 403  Q
    | |  | |||||||  ||||||||||| ||| ||   ||||||||||||| |  | ||||| || ||||||||||||||||||||| | ||| ||| |||    
T  551574 gagaagactcctgatttgtgagcatatcatataccccacgaacagagtaaccttcggaagggtccggtaaccactgccaaacatcaaacgaaggaggctg 551475  T
Q  404 caaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||||| |   | ||| |||||||||||| ||||||| ||||||||    
T  551474 caaagaaacatcagaaagtaataacctacactccgctaaaagttcctcctc 551424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 6343579 - 6343511
Alignment:
Q  386 atcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcctc 454  Q
    |||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  6343579 atcaaaagaaagaggctgcaaagaaacatta-gtaagtaacaacctacactcctctaaaagctcctcctc 6343511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 45165523 - 45165447
Alignment:
Q  361 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 437  Q
    |||| ||||||  ||||||||| |||||||||||||||| ||||||||||||||||   | ||| ||||||||||||    
T  45165523 aagggtctggttgccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactcc 45165447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 437
Target Start/End: Original strand, 39694660 - 39694723
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 437  Q
    ||||||||| |||||||||||||||| ||||||||||||||||   | ||| ||||||||||||    
T  39694660 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactcc 39694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 442
Target Start/End: Original strand, 29557447 - 29557497
Alignment:
Q  392 agaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaa 442  Q
    |||||||  |||||||||||||| ||||| ||||| |||||||||||||||    
T  29557447 agaaagattctgcaaagaaacatcaagtagtaacatcctacactcctctaa 29557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 45976643 - 45976574
Alignment:
Q  95 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaa 164  Q
    ||||||||||| |||||| | |||||| |||| ||||||||||||||| || || || |||| |||||||    
T  45976643 cccaaagcaagtacacgacaaaaacaagtgacgagcatcctccacctgaccacatccagaaagacacaaa 45976574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 8771450 - 8771518
Alignment:
Q  201 ttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 269  Q
    |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  8771450 ttagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 8771518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 39694526 - 39694566
Alignment:
Q  240 gcaaaaattgacaccttaagaggaacctgattatgccaaac 280  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  39694526 gcaaaaatagacaccttaagaggaacctgtttgtgccaaac 39694566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 117 - 454
Target Start/End: Original strand, 14853834 - 14854171
Alignment:
Q  117 aacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgatgccaggttagatttagtaggta 216  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||| |||| |   ||||||||  |||||||||||||||| |||||||||||||||      
T  14853834 aacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaagcatccacattaattataccacgtgatgccaagttagatttagtaggag 14853933  T
Q  217 atcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctg 316  Q
      ||||||||||| || ||||| ||||| | ||||||||| ||  ||||||| ||||||||||  |  || ||| ||||| ||||||||||| |||||||    
T  14853934 gacgatcacggagcagccgccaagcaaagactgacacctttaggagaacctgtttatgccaaatcaaatcgacatcctgagtaacctgcggtacctcctg 14854033  T
Q  317 agatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 416  Q
    || ||||||||||  ||||| |||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  14854034 agttgtgagcataacatacatagaacgaacaaagtaatcacctgagggatccggtaaccactgccacacatcataagaaagagactgcaaagaaacatta 14854133  T
Q  417 agtaataacaacctacactcctctaaaagatcctcctc 454  Q
    || | |||||  ||||||||||||||||||||||||||    
T  14854134 agaagtaacattctacactcctctaaaagatcctcctc 14854171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 45684186 - 45684260
Alignment:
Q  195 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 269  Q
    ||||| |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  45684186 gccagattagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 45684260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 17700285 - 17700334
Alignment:
Q  234 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 283  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  17700285 cgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaag 17700334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 53941368 - 53941417
Alignment:
Q  234 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 283  Q
    ||||| |||||||| || ||||| ||||||||||| ||||||||||||||    
T  53941368 cgccatgcaaaaatggataccttcagaggaacctgcttatgccaaacaag 53941417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 95 - 454
Target Start/End: Complemental strand, 7956882 - 7956539
Alignment:
Q  95 cccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggtcacattaagaataccacgtgat 194  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||| ||||| |||| ||  ||||||||  |||||||| |||    
T  7956882 cccaaagcaaggacatgagagaaacaaatgacgagcatcctccacctggccacaccccgaaacacacatagaagcgtccacattaattataccacgagat 7956783  T
Q  195 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacct 294  Q
    |||| ||||||||||||||| |  ||||||||||| |  ||||| ||||| | ||||||||| || |||||||| ||||||||||  |  || ||| |||    
T  7956782 gccaagttagatttagtaggaaggcgatcacggagcaaccgccaagcaaagactgacacctttaggggaacctgtttatgccaaattaaatcgacatcct 7956683  T
Q  295 gattaacctgcggtgcctcctgagatgtgagcatataatacacagaacgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataaga 394  Q
     | |||| ||||                |||||||  ||||| |||||||||| ||||| |  |||| ||||| |||||||||||||| |||||||||||    
T  7956682 aagtaacatgcg----------------gagcataacatacatagaacgaacaaagtaaccttctgagggatccggtaaccactgccacacatcataaga 7956599  T
Q  395 aagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||| |||||||||||||||| | | |||||||||| ||||||||||||||||||||||    
T  7956598 aagagactgcaaagaaacattatgaagtaacaacctagactcctctaaaagatcctcctc 7956539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 242 - 454
Target Start/End: Original strand, 18588409 - 18588621
Alignment:
Q  242 aaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaa 341  Q
    ||||||||||||||| |  |||| ||| ||||||||||  |  || ||| ||||| ||||||| ||  | | || || ||||||||||  ||||||||||    
T  18588409 aaaaattgacacctttaagggaatctgtttatgccaaagtaaatcgacatcctgagtaacctggggaactttctaagttgtgagcatagcatacacagaa 18588508  T
Q  342 cgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctcta 441  Q
    |||||||||||| | | ||| ||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  18588509 cgaacagagtaacctcttgatggatccggtaaccactaccacacatcataagaaagaggctgcaaagaaacattaagaagtaacaacctacactcctcta 18588608  T
Q  442 aaagatcctcctc 454  Q
    |||||||||||||    
T  18588609 aaagatcctcctc 18588621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 15602513 - 15602593
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  15602513 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaagctcctcctc 15602593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 280
Target Start/End: Original strand, 15602321 - 15602419
Alignment:
Q  182 aataccacgtgatgccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaac 280  Q
    ||||||||| | ||| | |||||| ||||| || ||||||||||| || |  ||||| |||||||| ||||||||||  ||||| || |||||||||||    
T  15602321 aataccacgggttgctaagttagacttagtgggaaatcgatcacgaagcaaccgccaagcaaaaatagacaccttaatcggaacatggttatgccaaac 15602419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 14528424 - 14528468
Alignment:
Q  236 ccacgcaaaaattgacaccttaagaggaacctgattatgccaaac 280  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||    
T  14528424 ccacgcaaaaactgagaccttcaaaggaacctgattatgccaaac 14528468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 26513774 - 26513822
Alignment:
Q  235 gccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 283  Q
    |||| |||||||| || ||||| ||||||||||| ||||||||||||||    
T  26513774 gccaagcaaaaatggaaacctttagaggaacctgcttatgccaaacaag 26513822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 76 - 172
Target Start/End: Original strand, 39584909 - 39585005
Alignment:
Q  76 gcaccacagaccacagctccccaaagcaaggacacgagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaatcggt 172  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||    
T  39584909 gcaccagagaccacaactccctaaagcaaggacacgagagaaacaaatgacgagcatcctccacctggccacaccccaaaatacacaaagaatcggt 39585005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 30712830 - 30712750
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  30712830 ccactgccacacatcataagaaagaggctgcagagaaacatta-gtaagtaacaacctacactcctctaaaagctcctcctc 30712750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 9991072 - 9991150
Alignment:
Q  201 ttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctgattatgccaaa 279  Q
    |||||||||||||| |   ||||||| || || ||||| |||||||| | ||||||||| |||||||| ||||||||||    
T  9991072 ttagatttagtaggaaggtgatcacgaagcagccgccaagcaaaaataggcaccttaagcggaacctgtttatgccaaa 9991150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 9991241 - 9991292
Alignment:
Q  369 ggtaaccactgccaaacatca----taagaaagagcctgcaaagaaacatta 416  Q
    |||||||||||||||||||||    |||||||||| ||||||||||||||||    
T  9991241 ggtaaccactgccaaacatcataattaagaaagaggctgcaaagaaacatta 9991292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 54684799 - 54684878
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaa-taacaacctacactcctctaaaagatcctcct 453  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||  |||||||    
T  54684799 ccactgccacacatcataagaaagaggctgcaaagaaacatt-agtaagtaacaacctacactcctctaaaatttcctcct 54684878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 40688256 - 40688336
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||  | ||| |||||||||||| | | ||| ||||||||    
T  40688256 ccactgccacacatcataagaaagaggctgcaatgaaacattaacaagtaataacctacactccgcaagaagctcctcctc 40688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 19163141 - 19163065
Alignment:
Q  361 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 437  Q
    ||||||| |||  ||||||||| ||||||||||||||||  |||||||||||||||   | ||| ||||||||||||    
T  19163141 aaggatccggttgccactgccacacatcataagaaagaggttgcaaagaaacattagcaagtaataacctacactcc 19163065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 46639120 - 46639046
Alignment:
Q  195 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 269  Q
    ||||| |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  46639120 gccagattagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 46639046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 30821828 - 30821779
Alignment:
Q  234 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 283  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||    
T  30821828 cgccaagcaaatattgagaccttaagtggaacctgtttatgccaaacaag 30821779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 341 - 414
Target Start/End: Complemental strand, 87186 - 87113
Alignment:
Q  341 acgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacat 414  Q
    |||||| |||||| | || | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  87186 acgaaccgagtaacctccagcaggatccggtaaccactgccaaacatcataagaaagaggctgcaaagaaacat 87113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 454
Target Start/End: Complemental strand, 44029159 - 44029077
Alignment:
Q  372 aaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    |||||||||||||||||| ||||||||| |||||| ||||||| |   | ||| |||||||||||| ||||||||||||||||    
T  44029159 aaccactgccaaacatcaaaagaaagaggctgcaaggaaacatcagacagtaataacctacactccgctaaaagatcctcctc 44029077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 446
Target Start/End: Original strand, 1468053 - 1468257
Alignment:
Q  242 aaaaattgacaccttaagaggaacctgattatgccaaacaaggtccacaacctgattaacctgcggtgcctcctgagatgtgagcatataatacacagaa 341  Q
    |||||| | |||||||||||| ||||| ||||||||||  | ||| ||||||||  || ||||||||  |||||||   |||||||||  |||||||  |    
T  1468053 aaaaatagtcaccttaagaggtacctgtttatgccaaatcaagtcaacaacctgcctatcctgcggtaactcctgatcagtgagcatagcatacacacca 1468152  T
Q  342 cgaacagagtaaacgcctgaaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctcta 441  Q
    |||||| | ||  |  |  | ||||| || | |||||| || |||||||||||||||| ||||||||||||||||   | ||| | ||||||||||||||    
T  1468153 cgaacataatacccttcgaagggatccgggagccactgtcacacatcataagaaagaggctgcaaagaaacattagcaagtaatagcctacactcctcta 1468252  T
Q  442 aaaga 446  Q
     ||||    
T  1468253 taaga 1468257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 6727728 - 6727648
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||| |||||||||||||||| ||||||||||||||||   | ||| |||||||||||| | | ||| ||||||||    
T  6727728 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcctc 6727648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 437
Target Start/End: Complemental strand, 2207773 - 2207710
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcc 437  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||   | ||| ||||||||||||    
T  2207773 ccactgccacacatcataagaaagaggctgtaaagaaacattagcaagtaataacctacactcc 2207710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 28400680 - 28400606
Alignment:
Q  195 gccaggttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 269  Q
    ||||| |||| ||| |||||||||||||| ||||  || ||||||||||||| ||| ||||| | ||||||||||    
T  28400680 gccagattagctttcgtaggtaatcgatcccggataagccgccacgcaaaaactgaaaccttcaaaggaacctga 28400606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 2207907 - 2207867
Alignment:
Q  240 gcaaaaattgacaccttaagaggaacctgattatgccaaac 280  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  2207907 gcaaaaatagacaccttaagaggaacctgtttgtgccaaac 2207867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 32239704 - 32239760
Alignment:
Q  111 gagagaaacaaatgactagcatcctccacctggccgcaccccgaaatacacaaagaa 167  Q
    |||||||||||||||| ||||||||||||||| || |||||||||| ||||| ||||    
T  32239704 gagagaaacaaatgacgagcatcctccacctgaccacaccccgaaacacacatagaa 32239760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 454
Target Start/End: Original strand, 36255968 - 36256048
Alignment:
Q  374 ccactgccaaacatcataagaaagagcctgcaaagaaacattaagtaataacaacctacactcctctaaaagatcctcctc 454  Q
    ||||||||| |||||||||||||||| ||||||||||||||||   | ||| |||||||||||| | | ||| ||||||||    
T  36255968 ccactgccacacatcataagaaagaggctgcaaagaaacattagcaagtaataacctacactccgcaagaagctcctcctc 36256048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 3168649 - 3168581
Alignment:
Q  201 ttagatttagtaggtaatcgatcacggagtagtcgccacgcaaaaattgacaccttaagaggaacctga 269  Q
    |||| ||| |||||||||||||| ||||  || ||||||||||||||||| ||||| | ||||||||||    
T  3168649 ttagctttcgtaggtaatcgatctcggataagccgccacgcaaaaattgaaaccttcaaaggaacctga 3168581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 9724772 - 9724723
Alignment:
Q  234 cgccacgcaaaaattgacaccttaagaggaacctgattatgccaaacaag 283  Q
    ||||| ||||||||||| |||||||| ||||| || ||||||||||||||    
T  9724772 cgccaagcaaaaattgagaccttaagtggaacatgtttatgccaaacaag 9724723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 12956 - 12901
Alignment:
Q  361 aaggatctggtaaccactgccaaacatcataagaaagagcctgcaaagaaacatta 416  Q
    ||||||| |||  ||||||||| |||||||||||||||| ||||||||||||||||    
T  12956 aaggatccggttgccactgccacacatcataagaaagaggctgcaaagaaacatta 12901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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