View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2657_low_8 (Length: 262)
Name: NF2657_low_8
Description: NF2657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2657_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 28884734 - 28884487
Alignment:
| Q |
4 |
tccaagaaaaagctacaaaaagaatgcagaaacaagtnnnnnnngagagaaccatattatgaactatactaacttgcacagacaaaaatcagctaagatg |
103 |
Q |
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| T |
28884734 |
tccaagaaaaagctacaaaaagaatgcagaaacaagtaaaaaaagagagaaccatattatgaactatactaacctgcacagacaaaaatcagctaagatg |
28884635 |
T |
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| Q |
104 |
aatatctaaacaatttctgagatgataaccattggcaaacataaactattccccaaggcaaccaacaaatgcccacggacatatgttggacaccacatac |
203 |
Q |
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| T |
28884634 |
aatatctaaacaatttctgagatgataaccattggcgaccataaactataccccaaggcaaccaacaaatgcccacggacatatgttggacaccacatac |
28884535 |
T |
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| Q |
204 |
gttcttcagtctgaagagtcggtgctacattaatttaccagtccctat |
251 |
Q |
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| T |
28884534 |
gttcttcagtatgaagagtcggtgctacattaatttaccagtccctat |
28884487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 28871489 - 28871397
Alignment:
| Q |
89 |
aaatcagctaagatgaatatctaaacaatttctgagatgataaccattggcaaacataaactattccccaaggcaaccaacaaatgcccacgg |
181 |
Q |
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| T |
28871489 |
aaatctgctaagatgaatgtctggacaatttctgagataagaaccatcgacggccataaaccataccccaaggcaaccaacaaatgtccacgg |
28871397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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