View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2659_high_10 (Length: 316)
Name: NF2659_high_10
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 22633972 - 22633684
Alignment:
| Q |
9 |
tagcatagggcaagttacagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatg |
108 |
Q |
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| T |
22633972 |
tagcatagggcaagttacagtcggttgtctaaactcgctgtataaaagtgtggcagatctggatgaaggttgtgtctctaacgagacaatcaaacaaatg |
22633873 |
T |
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| Q |
109 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgtgccgcctact |
208 |
Q |
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| T |
22633872 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgtgccacctact |
22633773 |
T |
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| Q |
209 |
tgattggctgcttatatcgtaatattaccaactcaacctataaagataaacataaatgtcactgtgggaattcttttacccatccaatt |
297 |
Q |
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| T |
22633772 |
ctattggctgcttatatcgtaatattaccaactcaacgtataaagataaacataaatgtcactgtgggaattcttttacccatccaatt |
22633684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 22625162 - 22625351
Alignment:
| Q |
9 |
tagcatagggcaagttacagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatg |
108 |
Q |
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||||||||||||||||||||| |||||||||||||| || ||| |||||| ||| |||||||||||||||||||||| | | |||| |||||||||| |
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| T |
22625162 |
tagcatagggcaagttacagttggttgtctaaactctctctatggaagtgttgcaaatctggatgaaggttgtttctcaactaagacaaccaaacaaatg |
22625261 |
T |
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| Q |
109 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgt |
198 |
Q |
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| T |
22625262 |
ttgctgcagccaataaactcagctgaagattattgcaacactcttaaactcaacattgatgacactcaaccaacaaagtacttcgcatgt |
22625351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 23365710 - 23365876
Alignment:
| Q |
9 |
tagcatagggcaagttacagtcggttgtctaaactcactgtataaaagtgtggcagatctggatgaaggttgtttctctaacgatacaatcaaacaaatg |
108 |
Q |
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||||||||||| |||||| || ||||||||||||||||| ||| |||||||| ||||| ||||||| |||| | || ||||||||||||||||| |
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| T |
23365710 |
tagcatagggccagttaccgttggttgtctaaactcactctatcgaagtgtggttgatcttgatgaagattgtatgagtagtcatacaatcaaacaaatg |
23365809 |
T |
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| Q |
109 |
cttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactc |
175 |
Q |
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| T |
23365810 |
ctgcttaaaccaactaactttgcagaagattattgcaacactcttgaacttaacatcgaagacactc |
23365876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 22622971 - 22623064
Alignment:
| Q |
94 |
acaatcaaacaaatgcttctacaaccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagt |
187 |
Q |
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| T |
22622971 |
acaaccaaacaaatgttgctgcaacctattaacttcgcagaagattattgcaacactcttaaacttaacatcgatgacactcaaccaacaaagt |
22623064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 23336035 - 23335955
Alignment:
| Q |
118 |
ccaatcaactcagcggaagattattgtaacactcttaaaatcaacattgacgacactcaaccaacaaagtacttcacatgt |
198 |
Q |
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|||| ||||| ||| |||| |||||||| ||||||||| | |||||||||||| | | |||||||||||||||| |||| |
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| T |
23336035 |
ccaaccaacttagcagaaggttattgtagaactcttaaacttaacattgacgactcaaatccaacaaagtacttcatatgt |
23335955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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