View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2659_high_12 (Length: 308)
Name: NF2659_high_12
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 4236077 - 4235785
Alignment:
| Q |
1 |
agagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4236077 |
agagttcagatattgttatattagatgacaattttgcatctattgtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattca |
4235978 |
T |
|
| Q |
101 |
atttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatgggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235977 |
atttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatgggtg |
4235878 |
T |
|
| Q |
201 |
aatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaag |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4235877 |
aatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaag |
4235785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 272
Target Start/End: Original strand, 30441409 - 30441500
Alignment:
| Q |
181 |
cagttcaattattatgggtgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaa |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30441409 |
cagttcaattattatgggtgaatttgattatggatacattagatgctttggctcttgcaactgaaaaacctactaaggaactaatggataaa |
30441500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 6185201 - 6184909
Alignment:
| Q |
1 |
agagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185201 |
agagttcagatattgttatattagatgacaattttgcatctatcgtaacagtgttaaactggggaagatgtgtttacaacaacattcaaaaattcattca |
6185102 |
T |
|
| Q |
101 |
atttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcagcaggcgaagttccgttaacagcagttcaattattatgggtg |
200 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
6185101 |
atttcaactaacagtgaatgtggcagcccttgttatcaatttcgttgcggcggtttcagccggtgaagtaccattaacagcagttcaattattatgggtg |
6185002 |
T |
|
| Q |
201 |
aatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaaggatttaatggataaagaacctgttggtagaacaaag |
293 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||| |
|
|
| T |
6185001 |
aatttgattatggatacattaggtgctttggctcttgcaactgaaaaacctactaaggaattaatggatgaaaaaccagttggtagaacaaag |
6184909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 19592960 - 19592829
Alignment:
| Q |
1 |
agagttcagatattgttatattagatgacaattttgcatctatagtaacagttataaattggggaagatgtgtttacaacaacattcaaaaattcattca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19592960 |
agagctcagatattgttatattagatgacaattttgcatctatagtaacaattttaaattggggaagatgtgtttacaacaacattcaaaaattcattca |
19592861 |
T |
|
| Q |
101 |
atttcaattaacagtgaatgtggcagcacttgttataaatt |
141 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| |
|
|
| T |
19592860 |
att---------agtgaatgtggcagcacttgttatcaatt |
19592829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 266
Target Start/End: Complemental strand, 38356962 - 38356756
Alignment:
| Q |
60 |
tggggaagatgtgtttacaacaacattcaaaaattcattcaatttcaattaacagtgaatgtggcagcacttgttataaattttgtcgcggcggtttcag |
159 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||| |||||| ||||||||||||| ||||||||||| ||||| ||| | || || ||||| |
|
|
| T |
38356962 |
tggggaagatgtgtttacaacaacatccagaaatttattcagtttcaactaacagtgaatgttgcagcacttgtgataaactttattgcagcagtttctt |
38356863 |
T |
|
| Q |
160 |
caggcgaagttccgttaacagcagttcaattattatgggtgaatttgattatggatacattaggtgcattggctcttgcaactgaaaaacctactaagga |
259 |
Q |
| |
|
| || || ||||| |||||| |||||||| | | ||||||||| | |||||||||||| ||||||| ||||| || ||||| |||| ||||| ||||| |
|
|
| T |
38356862 |
ctggtgatgttcccttaacaacagttcaacttctttgggtgaatctcattatggatacactaggtgctttggcactagcaacagaaaggcctacaaagga |
38356763 |
T |
|
| Q |
260 |
tttaatg |
266 |
Q |
| |
|
|||||| |
|
|
| T |
38356762 |
gttaatg |
38356756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University