View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2659_high_3 (Length: 601)
Name: NF2659_high_3
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 38 - 593
Target Start/End: Original strand, 28995993 - 28996549
Alignment:
| Q |
38 |
gtaataatattttt-aacaaatgtggaaaataatttgttatttttatttgacccattattcctccaagtcacatcacacaccgtcctagctaaaaacaca |
136 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28995993 |
gtaataatattttttaacaaatgtggaaaataatttgttatttttatttgacccattattcctccaagtcacatcacacaccgtcctagctaaaaacaca |
28996092 |
T |
|
| Q |
137 |
agcaatataataatccattgtacactatatatacacaagcaatatcatagttcttttctatccattaccaattctcctcaactcaaatctaatcatcttt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28996093 |
agcaatataataatccattgtacactatatatacacaagcaatatcatagttcttttctatccattaccaattctcctcaactcaaatctaatcatcttt |
28996192 |
T |
|
| Q |
237 |
cactactcannnnnnnagttctaaatttctaattaacatttttctctctcaaaaaatatatacaacatgggtttttcttcaatcaaattgtttgtgatat |
336 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28996193 |
cactactcatttttttagttctaaatttctaattaacatttttctctctcaaaaaatatatacaacatgggtttttcttcaatcaaattgtttgtgatat |
28996292 |
T |
|
| Q |
337 |
taggtcttttggctacctcatgcctagcacaagctcctgcaccagcacccacacaatcattatcaccaaattcagcaccagttccatcatcctccacaag |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28996293 |
taggtcttttggctacctcatgcctagcacaagctcctgcaccagcacccacacaatcattatcaccaaattcagcaccagttccatcatcctccacaag |
28996392 |
T |
|
| Q |
437 |
gtcaccaacaccctctcctgcagtttctccttcaacctcttcttctccaggcccaagccctaacacatcttccccaccagcaccaggctcaaatagccca |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28996393 |
gtcaccaacaccctctcctgcagtttctccttcaacctcttcttctccaggcccaagccctaacacatcttccccaccagcaccaggctcaaatagccca |
28996492 |
T |
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| Q |
537 |
gcatcaggcccaggtgggcccggactagagcagccaggagctgagtcaccctatgct |
593 |
Q |
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| T |
28996493 |
gcatcaggcccaggtgggcccggactagagcagccaggagctgagtcaccctctgct |
28996549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 263 - 550
Target Start/End: Original strand, 29008172 - 29008463
Alignment:
| Q |
263 |
ttctaattaa-catttttctctctcaaaaaatatatacaacatgggtttttcttcaatcaaattgtttgtgatattaggtcttttggctacctcatgcct |
361 |
Q |
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|||||||||| |||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
29008172 |
ttctaattaaacattcttctctctcaaaaaacatatacaacatgggttttgcatcaatcaaattgtttgtgatattgggacttttggctacatcatgcct |
29008271 |
T |
|
| Q |
362 |
agcacaagctcctgcaccagcacccacacaatcattatcaccaaattcagcaccagttccatcatcctccacaaggtcaccaacaccctctcctgcagtt |
461 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
29008272 |
agcacaagctcctgcaccagcacccacaca---attatcaccaaattcagcaccagctccatcaccctccacaaaatcaccaacaccctctcctgcagtt |
29008368 |
T |
|
| Q |
462 |
tctccttcaacctcttcttctccag------gcccaagccctaacacatcttccccaccagcaccaggctcaaatagcccagcatcaggcccagg |
550 |
Q |
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||||||||||| |||||||| |||| |||||||||| ||||| | ||| ||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
29008369 |
tctccttcaacttcttcttcaccaggctcaagcccaagcccgaacactttttcaccaccagcaccaggctcaaatgtcccggcatctggcccagg |
29008463 |
T |
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