View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2659_low_11 (Length: 336)
Name: NF2659_low_11
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 38768117 - 38768433
Alignment:
| Q |
19 |
aatgaattgcggctggaggaagttccagacatgggttacaatcctcttggaactcctccatgtggggagatatgtgtcagaggcaaaagtgttttcactg |
118 |
Q |
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| T |
38768117 |
aatgaattgcggctggaggaagttccagacatgggttacaatcctcttggaactccgccatgtggagagatatgtgtcagaggcaaaagtgttttcactg |
38768216 |
T |
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| Q |
119 |
gttaccataaaaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaattctcttcttctacctcaaaatatttctattatt |
218 |
Q |
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| T |
38768217 |
gttaccataagaatcctgagttaacaaaagaagccataatagatggatggtttcacacaggttgaattctcttcttctacctcaaaatatttctattatt |
38768316 |
T |
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| Q |
219 |
ttagcaaatcttgccacgttctaatgtga-nnnnnnnnnnnaatgacaaatattagcatgttagtattttctcctgtacgaggattcaaacccttgacct |
317 |
Q |
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| T |
38768317 |
ttagcaaatcttgccacgttctaatgtgatttattttttttaatgacaaatattagcatgttagtattttctcccgtacgaggattcaaacccttgacct |
38768416 |
T |
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| Q |
318 |
ttaactcctttgctact |
334 |
Q |
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| T |
38768417 |
ttaactcttttgctact |
38768433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 44996113 - 44995964
Alignment:
| Q |
37 |
gaagttccagacatgggttacaatcctcttggaactcctccatgtggggagatatgtgtcagaggcaaaagtgttttcactggttaccataaaaatcctg |
136 |
Q |
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| T |
44996113 |
gaagttccagagatgggttacaatcctcttggaaatccttcatgtggtgagatatgtcttagagggaaatcagttttctctggctaccacaaaaaccctg |
44996014 |
T |
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| Q |
137 |
agttaacaaaagaagccataatagatggatggtttcacacaggttgaatt |
186 |
Q |
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| T |
44996013 |
agttaacaaaggaatccatagtagatggatggtttcacacaggttgaatt |
44995964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 324
Target Start/End: Original strand, 47774091 - 47774140
Alignment:
| Q |
275 |
atgttagtattttctcctgtacgaggattcaaacccttgacctttaactc |
324 |
Q |
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| T |
47774091 |
atgttagtattttctcccttgccaggattcaaaccctggacctttaactc |
47774140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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