View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2659_low_19 (Length: 249)

Name: NF2659_low_19
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2659_low_19
NF2659_low_19
[»] chr7 (1 HSPs)
chr7 (1-247)||(1529156-1529402)
[»] chr4 (3 HSPs)
chr4 (14-246)||(14040516-14040748)
chr4 (5-240)||(17131308-17131543)
chr4 (5-183)||(19799757-19799935)
[»] chr2 (5 HSPs)
chr2 (5-213)||(34978203-34978411)
chr2 (8-234)||(28018950-28019176)
chr2 (20-234)||(20482023-20482237)
chr2 (8-241)||(13132304-13132537)
chr2 (79-240)||(19914601-19914759)
[»] chr6 (2 HSPs)
chr6 (8-234)||(6343921-6344147)
chr6 (5-151)||(15484255-15484401)
[»] chr3 (2 HSPs)
chr3 (8-241)||(8837744-8837977)
chr3 (8-241)||(55311680-55311913)
[»] chr5 (3 HSPs)
chr5 (8-241)||(26491843-26492076)
chr5 (20-234)||(16989188-16989402)
chr5 (5-83)||(9845296-9845374)
[»] chr8 (2 HSPs)
chr8 (31-247)||(19995868-19996084)
chr8 (175-240)||(12148307-12148372)
[»] chr1 (1 HSPs)
chr1 (31-126)||(9802203-9802298)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 1529156 - 1529402
Alignment:
Q  1 attttagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529156 attttagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcct 1529255  T
Q  101 attaaccttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1529256 attaaccttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaa 1529355  T
Q  201 ggatacctgaatcatgcagcaaatccaaacaatattttcttcgacat 247  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  1529356 ggatacctgaatcatgcagcaaatccaaacaatattttctttgacat 1529402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 14040748 - 14040516
Alignment:
Q  14 tgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaaccttctat 113  Q
    ||||||||||| || | ||||||||| ||||||||||| ||||| ||||| ||||||||||| ||||||| ||| |||| |||||| | ||  |||||||    
T  14040748 tgtgtaggtttactgagaaattgactaagttgttgagtgatgaatgtaatatcaggtctagtggtgttcaaatatatcagtcttcccactagtcttctat 14040649  T
Q  114 atgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacctgaatc 213  Q
    | |||||||||||||  || || |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |  ||| ||||    
T  14040648 aagcagaaacatcagcgaaaagtggtgaactatcattgtgtaacttgattgagggatcagaaggtgtagtaacaggttttgagccaagcaatcctaaatc 14040549  T
Q  214 atgcagcaaatccaaacaatattttcttcgaca 246  Q
    |||||  ||||||| ||||||||||||| ||||    
T  14040548 atgcaataaatccagacaatattttctttgaca 14040516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 17131543 - 17131308
Alignment:
Q  5 tagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctatta 104  Q
    ||||||||||| |||||||| || ||||||||||||||||| || || || || || ||||| ||||| ||||| ||||  || |||||||| ||||| |    
T  17131543 tagtgagtttgagtaggtttactcaaaaattgactgagttgatgggtgataaaggtgatgtctggtctggttgtattcaagtagatcaatctccctatca 17131444  T
Q  105 accttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggat 204  Q
    | |||||||| ||||||| |||||  || |||| |||| |||||||||||||||||||||| ||||| || ||||||||||| ||||||||||| || |     
T  17131443 atcttctataagcagaaatatcagggaaaagagttgaactatcattgtgtaatttgatggaaggatctgatggtgtagtaaccggtttggaacccagaag 17131344  T
Q  205 acctgaatcatgcagcaaatccaaacaatattttct 240  Q
    |||||||||||| | |||||||| ||||||||||||    
T  17131343 acctgaatcatgtaacaaatccagacaatattttct 17131308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 19799757 - 19799935
Alignment:
Q  5 tagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctatta 104  Q
    ||||| ||||| |||||||| || |||| |||||| | |||||| || |||||||| ||||  ||||| ||||| |||| ||  |||||||||||||| |    
T  19799757 tagtgggtttgagtaggtttactcaaaagttgacttaattgttgtgttatgaaagtgatgtatggtcttgttgtattcaaattgatcaatcttcctatca 19799856  T
Q  105 accttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagt 183  Q
    |||||||| | |||||||||||||  ||   |  |||| |||||||||||||  |||| || |||||||||||||||||    
T  19799857 accttctacaagcagaaacatcagggaaagcatttgaactatcattgtgtaacctgatagatggatcagaaggtgtagt 19799935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 34978203 - 34978411
Alignment:
Q  5 tagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctatta 104  Q
    ||||||||||| |||||||| || ||||| || |||||||||||||| |||||||| ||||   | || ||||| |||||||||||||| ||||||||||    
T  34978203 tagtgagtttgagtaggtttactcaaaaactggctgagttgttgagttatgaaagtgatgtatcggcttgttgtattcagataaatcaaccttcctatta 34978302  T
Q  105 accttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggat 204  Q
    |||||||||| |||||||||||||| ||   |  | |||||||||| ||||| ||||| || ||||||||||||||||| |  ||||| ||||||||||     
T  34978303 accttctataagcagaaacatcagtgaatgcattttaattatcattatgtaacttgatagatggatcagaaggtgtagtgattggtttagaaccaaggag 34978402  T
Q  205 acctgaatc 213  Q
    || ||||||    
T  34978403 acatgaatc 34978411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 28019176 - 28018950
Alignment:
Q  8 tgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaacc 107  Q
    ||||| ||||| ||||| || |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| || |  || |    
T  28019176 tgagtgtgtgttggtttactcaaaaattgactgagctgttgagttatgaatgtaatgtcaggcctagttgtgttgagatagatcaatctcccaaccaatc 28019077  T
Q  108 ttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacc 207  Q
    |||| || ||||| |||||||| ||||| |||||| | |||||||| |  || ||||| ||||| |||||||| |||||||| || || ||||| | |||    
T  28019076 ttctgtaagcagagacatcagtgaagagtggtgaagtgtcattgtgcagcttaatggatggatctgaaggtgtggtaacaggctttgagccaagtaaacc 28018977  T
Q  208 tgaatcatgcagcaaatccaaacaata 234  Q
    |||||| || | |||||||| ||||||    
T  28018976 tgaatcttgtaacaaatccagacaata 28018950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 20482023 - 20482237
Alignment:
Q  20 ggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaaccttctatatgcag 119  Q
    ||||| || ||||||||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| || |  || ||||| || ||||    
T  20482023 ggtttactcaaaaattgactaagctgttgagttatgaatgtaatgtcaggcctagttgtgttgagatagatcaatctcccaaccaatcttctgtaagcag 20482122  T
Q  120 aaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacctgaatcatgcag 219  Q
    | |||||||| ||||| |||||| | |||||||| || || ||||| ||||| |||||||| |||||||| || || ||||| | ||||||||| || |     
T  20482123 agacatcagtgaagagtggtgaagtgtcattgtgcaacttaatggatggatctgaaggtgtggtaacaggctttgagccaagtaaacctgaatcttgtaa 20482222  T
Q  220 caaatccaaacaata 234  Q
    |||||||| ||||||    
T  20482223 caaatccagacaata 20482237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 13132537 - 13132304
Alignment:
Q  8 tgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaacc 107  Q
    |||||||| || ||||| |||| ||| ||||| | ||| || ||||||||||||||||||||||| ||||| ||||  ||||||||||| || || |  |    
T  13132537 tgagtttgagttggtttgctaagaaactgactcaattgctgggtaatgaaagtaatgtcaggtctggttgtattcaagtaaatcaatctgccaatgagtc 13132438  T
Q  108 ttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacc 207  Q
    ||||||| || ||||  ||||  || ||| ||||| | ||||| || | |||||| ||||||||||| ||||||| |||||| || |||||||| |  ||    
T  13132437 ttctataagctgaaatgtcagggaaaagaagtgaagtgtcattatgaagtttgatagagggatcagagggtgtagaaacaggcttagaaccaagaaggcc 13132338  T
Q  208 tgaatcatgcagcaaatccaaacaatattttctt 241  Q
    |||||||| || || ||||||||| |||||||||    
T  13132337 tgaatcattcaacagatccaaacagtattttctt 13132304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 19914601 - 19914759
Alignment:
Q  79 gttcagataaatcaatcttcctattaaccttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggt 178  Q
    |||| ||||||||||||||||||| ||||||||||| ||| |||||||||| || | |  || | ||||||| ||||| || || || || ||||   ||    
T  19914601 gttccgataaatcaatcttcctatcaaccttctataagcataaacatcagtgaatacatttggactatcattatgtaacttaatagatgggtcag---gt 19914697  T
Q  179 gtagtaacaggtttggaaccaaggatacctgaatcatgcagcaaatccaaacaatattttct 240  Q
    ||||| || ||||| |||||||||| ||||||||| ||||| |||||||||||||| |||||    
T  19914698 gtagtgactggtttagaaccaaggaaacctgaatcttgcagtaaatccaaacaatactttct 19914759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 6344147 - 6343921
Alignment:
Q  8 tgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaacc 107  Q
    ||||| ||||| ||||| || |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| || |  || |    
T  6344147 tgagtgtgtgttggtttactcaaaaattgactgagctgttgagttatgaatgtaatgtcaggcctagttgtgttgagatagatcaatctcccaaccaatc 6344048  T
Q  108 ttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacc 207  Q
    |||| || ||||| |||||||| ||||| |||||| | |||||||| |  || ||||| ||||| |||||||| |||||||| || || ||||| | |||    
T  6344047 ttctgtaagcagagacatcagtgaagagtggtgaagtgtcattgtgcagcttaatggatggatctgaaggtgtggtaacaggctttgagccaagtaaacc 6343948  T
Q  208 tgaatcatgcagcaaatccaaacaata 234  Q
    |||||| || | |||||||| ||||||    
T  6343947 tgaatcttgtaacaaatccagacaata 6343921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 15484255 - 15484401
Alignment:
Q  5 tagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctatta 104  Q
    |||||||| ||||||||||| || |||||  |||| || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| | ||    
T  15484255 tagtgagtatgtgtaggtttacttaaaaacggactaagctgttgagtgatgaatgtaatgtcaggtctagttgtgtttagatagatcaatcttcccacta 15484354  T
Q  105 accttctatatgcagaaacatcagtaaagagaggtgaattatcattg 151  Q
    | |||||||| ||||| |||| ||| ||||||| |||||||||||||    
T  15484355 atcttctataagcagagacataagtgaagagagttgaattatcattg 15484401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 8837977 - 8837744
Alignment:
Q  8 tgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaacc 107  Q
    |||||||| || ||||| |||| ||| ||||| | |||||| ||||| ||||||||||||||||| ||||| ||||  ||||||||||| || || |  |    
T  8837977 tgagtttgagttggtttgctaagaaactgactcaattgttgggtaataaaagtaatgtcaggtctggttgtattcaagtaaatcaatctgccaataagtc 8837878  T
Q  108 ttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacc 207  Q
    |||||||||| |||||||||| |||  |||||||  ||||||| || | |||||| ||||||||||| ||||||| |||||| || |||||||| |  ||    
T  8837877 ttctatatgctgaaacatcagaaaaaggaggtgaggtatcattatggagtttgatagagggatcagagggtgtagaaacaggcttagaaccaagaaggcc 8837778  T
Q  208 tgaatcatgcagcaaatccaaacaatattttctt 241  Q
    |||||||| ||  | ||||||||| |||||||||    
T  8837777 tgaatcattcaatagatccaaacagtattttctt 8837744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 55311913 - 55311680
Alignment:
Q  8 tgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaacc 107  Q
    |||||||| || ||||| |||| |||  |||| | |||||| ||||||||||||||||||||||| ||||| ||||  ||||||||||| || || |  |    
T  55311913 tgagtttgagttggtttgctaagaaacagactcaattgttgggtaatgaaagtaatgtcaggtctggttgtattcaagtaaatcaatctgccaataagtc 55311814  T
Q  108 ttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacc 207  Q
    ||||||| || ||||||||||  ||  |||||||  ||||||| || | |||||| ||||||||||| ||||||| |||||| || |||||||| |  ||    
T  55311813 ttctataggctgaaacatcagagaaaggaggtgaggtatcattatggagtttgatagagggatcagagggtgtagaaacaggcttagaaccaagaaggcc 55311714  T
Q  208 tgaatcatgcagcaaatccaaacaatattttctt 241  Q
    |||||||| || || ||||||||| |||||||||    
T  55311713 tgaatcattcaacagatccaaacagtattttctt 55311680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 26492076 - 26491843
Alignment:
Q  8 tgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaacc 107  Q
    |||||||| || ||||| |||| ||| ||||| | |||||| ||||||||||||||||||||||| ||||| ||||  ||||||||||| || || |  |    
T  26492076 tgagtttgagttggtttgctaagaaactgactcaattgttgggtaatgaaagtaatgtcaggtctggttgtattcaagtaaatcaatctgccaataagtc 26491977  T
Q  108 ttctatatgcagaaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacc 207  Q
    ||||||| |  ||||||||||  ||  |||||||  ||||||| || | |||||| ||||||||||| ||||||| |||||| || |||||||| |  ||    
T  26491976 ttctataggttgaaacatcagagaaaggaggtgaggtatcattatggagtttgatagagggatcagagggtgtagaaacaggcttagaaccaagaaggcc 26491877  T
Q  208 tgaatcatgcagcaaatccaaacaatattttctt 241  Q
    |||||||| || || ||||||||| |||||||||    
T  26491876 tgaatcattcaacagatccaaacagtattttctt 26491843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 16989188 - 16989402
Alignment:
Q  20 ggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaaccttctatatgcag 119  Q
    ||||| || |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||| || |  || ||||| || ||||    
T  16989188 ggtttactcaaaaattgactgagctgttgagttatgaatgtaatgtcaggcctagttgtgttgagatagatcaatctcccaaccaatcttctgtaagcag 16989287  T
Q  120 aaacatcagtaaagagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacctgaatcatgcag 219  Q
    | |||||||| ||||| |||||| | |||||||| |  || ||||| ||||| |||||||| ||||| || || || ||||| | ||||||||| || |     
T  16989288 agacatcagtgaagagtggtgaagtgtcattgtgcagcttaatggatggatctgaaggtgtggtaaccggctttgagccaagtaaacctgaatcttgtaa 16989387  T
Q  220 caaatccaaacaata 234  Q
    |||||||| ||||||    
T  16989388 caaatccagacaata 16989402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 9845296 - 9845374
Alignment:
Q  5 tagtgagtttgtgtaggttttctaaaaaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttca 83  Q
    |||||||  |||||||||||  | | ||| ||||||||||||||  ||||||||||||| || ||||||||||| ||||    
T  9845296 tagtgagcatgtgtaggtttggtgagaaactgactgagttgttggataatgaaagtaatatctggtctagttgtattca 9845374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 247
Target Start/End: Complemental strand, 19996084 - 19995868
Alignment:
Q  31 aaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaaccttctatatgcagaaacatcagta 130  Q
    ||||| ||| ||||||||||| ||| |||| |||||||||||||||||||| || ||||  ||||| || || |||||| ||||||| |  | || || |    
T  19996084 aaattaactaagttgttgagtgatgtaagtgatgtcaggtctagttgtgttgaggtaaagtaatctaccaatcaaccttttatatgctggtatattagaa 19995985  T
Q  131 aa---gagaggtgaattatcattgtgtaatttgatggagggatcagaaggtgtagtaacaggtttggaaccaaggatacctgaatcatgcagcaaatcca 227  Q
    ||   ||||| |||   ||||||||| | |||||| || ||||||||||| || | ||| ||||| |||||||  | ||||||||||| || |||||| |    
T  19995984 aaagggagagctga---atcattgtgaagtttgatagaaggatcagaaggagtggaaactggtttagaaccaattaaacctgaatcattcaacaaatcaa 19995888  T
Q  228 aacaatattttcttcgacat 247  Q
     |||||| |||||| |||||    
T  19995887 gacaatactttctttgacat 19995868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 12148307 - 12148372
Alignment:
Q  175 aggtgtagtaacaggtttggaaccaaggatacctgaatcatgcagcaaatccaaacaatattttct 240  Q
    |||||||||||||||||| ||||| || | ||| |||||||  |||||||| |||||||| |||||    
T  12148307 aggtgtagtaacaggtttagaacccagtaaaccagaatcattgagcaaatctaaacaatactttct 12148372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 9802203 - 9802298
Alignment:
Q  31 aaattgactgagttgttgagtaatgaaagtaatgtcaggtctagttgtgttcagataaatcaatcttcctattaaccttctatatgcagaaacatc 126  Q
    ||||||||| | ||||||||||||||||||||| |||||||| ||||| || |||||||  || || || || ||||||||||| | |||||||||    
T  9802203 aaattgactcaattgttgagtaatgaaagtaatatcaggtcttgttgtattgagataaagtaacctgccaatcaaccttctataggaagaaacatc 9802298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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