View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2659_low_20 (Length: 237)
Name: NF2659_low_20
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_low_20 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 1528713 - 1528939
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1528713 |
atcatgagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
1528812 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaacatgaagatccctgagtaaatagagaagca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1528813 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaacatgaagatccctgagtaaatagagaagca |
1528912 |
T |
|
| Q |
211 |
attgaagttcacatgtagtagatgcca |
237 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
1528913 |
attgaagttcacatgtagtagatgcca |
1528939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 10293244 - 10293101
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
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||||| ||| |||||||| |||||||||||||| ||| |||| || ||||| ||||||||||| ||||||||| ||| |||| || |||||| | || |
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| T |
10293244 |
atcatgagtagtgactgggagaagcttgaagaggcctacttgtaatttttccctcacaatatgccagtcaattttaagatgtttggttctctcatggaag |
10293145 |
T |
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| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagta |
154 |
Q |
| |
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||||||||||||||| ||||||||| ||||| ||| |||||||| |
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| T |
10293144 |
actggtttagctgcaatgtgcatagtactttgattatcacagta |
10293101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 17132009 - 17131797
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
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||||| |||||||||||||| ||||||||| || || |||| | ||||| ||||||||||| |||||||||||||||||| || || ||| | || |
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| T |
17132009 |
atcatgagtggtgactggtaaaagcttgaataggccagcttgaagtttttccctcacaatatgacagtcaatttcaaggtgtttggttctttcatggaac |
17131910 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaacatgaagatccctgagtaaatagagaagca |
210 |
Q |
| |
|
||| | || |||||| ||||||||||||||| ||| ||||| || || || || ||||||||||| | |||||||||||| ||||| | |||||| | | |
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|
| T |
17131909 |
actagatttgctgcaatgtgcatagcactttgattatcacaatataaaactggaagttgaacacaatcaacatgaagatctctgagaagatagagcaacc |
17131810 |
T |
|
| Q |
211 |
attgaagttcaca |
223 |
Q |
| |
|
| ||||||||||| |
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|
| T |
17131809 |
actgaagttcaca |
17131797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 19914082 - 19914308
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| |||| | ||||| |||||||| ||| || |||| ||||| |||| || ||||| |||| |
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| T |
19914082 |
atcatgagtggtgactggtaggagcttgaagagaccagcttggagtttttccctcacaatgtggcagacaatctcaagatgtttggttttctcatgaaac |
19914181 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaacatgaagatccctgagtaaatagagaagca |
210 |
Q |
| |
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|| | ||| ||||| | ||||| |||||| ||||||||| |||| || || || |||| || | ||||||||||||| ||||||||||||| ||| |
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| T |
19914182 |
acgagattaactgcaatacgcatatcactttgattgtcacaaaacaaaactggaagctgaaggcactaaacatgaagatccgtgagtaaatagagcagcc |
19914281 |
T |
|
| Q |
211 |
attgaagttcacatgtagtagatgcca |
237 |
Q |
| |
|
|||||||||||| |||| ||| |||| |
|
|
| T |
19914282 |
tttgaagttcacaggtagcagaagcca |
19914308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 13133006 - 13132836
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
|
||||| |||||| ||||| || || ||||||| ||| |||| | |||||| || ||||| || ||||||||||||| |||| ||| || ||| |||| |
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| T |
13133006 |
atcatgagtggtaactggaaggagtttgaagatgcctgcttgtagcttttcccttacaatgtgacagtcaatttcaagatgtttagttctttcatgaaaa |
13132907 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaac |
181 |
Q |
| |
|
|| || || | |||| ||||||||||||||| ||| ||||| || | |||||| ||||||||||| ||||| |
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|
| T |
13132906 |
acaggatttgatgcaatgtgcatagcactttgattatcacaataaagcacaggaagttgaacacattgaac |
13132836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 34977737 - 34977901
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
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||||| ||| |||||||||| |||||||||||| || |||| | ||||| |||||||| ||| ||||||| || || ||| || |||||| | || |
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| T |
34977737 |
atcatgagtagtgactggtaaaagcttgaagaggcccgcttgaagtttttccctcacaatgtggcagtcaatctctagatgtatggttctctcatggaag |
34977836 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacaca |
175 |
Q |
| |
|
||||| || |||||| ||||||||| ||||| ||||||||||| || || || ||||||||||| |
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|
| T |
34977837 |
actgggttggctgcaatgtgcatagaactttggttgtcacagtaaaaaactggaagttgaacaca |
34977901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 55312337 - 55312212
Alignment:
| Q |
56 |
cttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaatactggtttagctgcattgtgcatagcactttaattgtcacagtac |
155 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||| |||| ||| || ||| |||| || || || | |||| ||||||||||||||| ||| ||||| || |
|
|
| T |
55312337 |
cttttccctgacaatatggcagtcaatttcaagatgtttagttctttcatgaaaaacaggatttgatgcaatgtgcatagcactttgattatcacaataa |
55312238 |
T |
|
| Q |
156 |
aacacagggagttgaacacagtgaac |
181 |
Q |
| |
|
| |||||| ||||||||||| ||||| |
|
|
| T |
55312237 |
agcacaggaagttgaacacattgaac |
55312212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 8838446 - 8838220
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
|
||||| |||||| ||||| ||||| ||||||| ||| |||| | |||||| |||||||| || | ||||| ||||| |||| || || ||| |||| |
|
|
| T |
8838446 |
atcatgagtggtaactggaagaagtttgaagatgcctgcttgtagcttttccctcacaatgtgacaatcaatctcaagatgtttggttctttcatgaaaa |
8838347 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaacatgaagatccctgagtaaatagagaagca |
210 |
Q |
| |
|
|| || || | |||| ||||||||||||||| ||| ||||| || | |||||| ||||||||||| ||||| | | ||| ||||||||||| | ||| |
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|
| T |
8838346 |
acaggattggatgcaatgtgcatagcactttgattatcacaataaagcacaggaagttgaacacattgaacttataaatctctgagtaaatataatagcc |
8838247 |
T |
|
| Q |
211 |
attgaagttcacatgtagtagatgcca |
237 |
Q |
| |
|
|||| | |||||| |||| |||||||| |
|
|
| T |
8838246 |
attgcaattcacaagtagcagatgcca |
8838220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 15483789 - 15484004
Alignment:
| Q |
11 |
atcatcagtggtgactggtagaagcttgaagagaccttcttgcaacttttcgctcacaatatggtagtcaatttcaaggtgttaagtcctctcacgaaat |
110 |
Q |
| |
|
||||| |||||||||||||| ||||||||| || | |||| | || || || ||||| ||| ||||| | ||||| |||| ||||||||| | ||| |
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|
| T |
15483789 |
atcatgagtggtgactggtaaaagcttgaatagtctagcttggagtttctctctaacaatgtggcagtcagtctcaagatgtttggtcctctcatggaat |
15483888 |
T |
|
| Q |
111 |
actggtttagctgcattgtgcatagcactttaattgtcacagtacaacacagggagttgaacacagtgaacatgaagatccctgagtaaatagagaagca |
210 |
Q |
| |
|
|| | || |||||| |||||||| |||| ||| | ||||||||| ||||| || | |||||| |||||||| |||||||| | ||||| || | | |
|
|
| T |
15483889 |
acaagattggctgcaatgtgcataatgctttgattataacagtacaaaacaggaagcttaacacattgaacatggagatccctcaacaaatatagcaacc |
15483988 |
T |
|
| Q |
211 |
attgaagttcacatgt |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
15483989 |
attgaagttcacatgt |
15484004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 14457746 - 14457683
Alignment:
| Q |
174 |
cagtgaacatgaagatccctgagtaaatagagaagcaattgaagttcacatgtagtagatgcca |
237 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| |||| | ||||||||||| | |||||| |
|
|
| T |
14457746 |
cagtgaatatgaagatctttgagtaaatagagaagccattgcaattcacatgtagcaaatgcca |
14457683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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