View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2659_low_3 (Length: 812)
Name: NF2659_low_3
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 259 - 641
Target Start/End: Complemental strand, 39939252 - 39938870
Alignment:
| Q |
259 |
ttgttttaaaaggcacgaggggatcatttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactcattttttatccacaa |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39939252 |
ttgttttaaaaggcacgaggggatcatttcctaagagtggtacaaaggtggtatgccacctaagtatgtccacctatcatcactcattttttatccacaa |
39939153 |
T |
|
| Q |
359 |
acaaaaaactcataaatgcatgctaaactataataaacctatagaccggagagtagagtgtacatgtgatcatggtacacaagattggtcattcatcatt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39939152 |
acaaaaaactcataaatgcatgctaaactataataaacctatagaccggagagtagagtgtacatgtgatcatggtacacaagattggtcattcatcatt |
39939053 |
T |
|
| Q |
459 |
taataatgagtgaaaaatatttcctccttcaaaagtacaaattagattctctatgaatatcaaggagcagtcggttatagatcgttagattaagagaaat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39939052 |
taataatgagtgaaaaatatttcctccttcaaaagtacaaattagattctctatgaatatcaaggagcagtcggttatagatcgttagattaagagaaat |
39938953 |
T |
|
| Q |
559 |
aaattttctttcttttaatttaacatctacaacgacttcgctgtaaaatggactatagtagatccagattctaaaagatatat |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39938952 |
aaattttctttcttttaatttaacatctacaaagacttcgctgtaaaatggactatagtagatccagattctaaaagatatat |
39938870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 639 - 812
Target Start/End: Complemental strand, 39938597 - 39938424
Alignment:
| Q |
639 |
tatatgattatatttggtttgtgttaatctaccatcttttgcgtcccaatgcatcagaaagaggctaaaatagtgaatttccaattcaacgcaaggtggc |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39938597 |
tatatgattatatttggtttgtgttaatctaccatcttttgcgtcccaatgcatcagaaagaggctaaaatagtgaatttccaattcaacgcaaggtggc |
39938498 |
T |
|
| Q |
739 |
atattgtgactacacatcaaacacgggataaagagaaccactaagacgccagaagaaaatcataacctaacaac |
812 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39938497 |
atattgtgactacacatcaaacccgggctaaagagaaccactaagacgccagaagaaaatcataacctaacaac |
39938424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 39939932 - 39940139
Alignment:
| Q |
1 |
ggggaaaaggcttgatctgcttctcaatgattttaaacatttaatcatgttattttgtttgaagactaagattatttgtggttatggtgcctatggacct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||| || |
|
|
| T |
39939932 |
ggggaaaaggcttgatctgcttctcaatgattttaaacatttattcatgttattttgtttgaagaccaatattatttgtggttatggtgcctatggatct |
39940031 |
T |
|
| Q |
101 |
gtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctgtaattttctcttcc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |
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|
| T |
39940032 |
gttgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggaaaaaaatgaataatacaaacttttatctctcctctaattttctcttcc |
39940131 |
T |
|
| Q |
201 |
cttttgtg |
208 |
Q |
| |
|
|| ||||| |
|
|
| T |
39940132 |
ctcttgtg |
39940139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 27128904 - 27128956
Alignment:
| Q |
180 |
tctcctgtaattttctcttccct-tttgtgtctcaacctttagatcaatccaa |
231 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
27128904 |
tctcctctaattttctctttcctctttgtgtctcaacctttagatcaatccaa |
27128956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 36325374 - 36325328
Alignment:
| Q |
297 |
ggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
36325374 |
ggtacaaaggtggtatgccacctaaggatgtcaacctatcatcactc |
36325328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 9809692 - 9809348
Alignment:
| Q |
1 |
ggggaaaaggcttgatctgcttctcaatgattttaaacatttaatcatgttattttgtttgaagactaagattatttgtggttatggtgcctatggacct |
100 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9809692 |
ggggaaaagacttgatttgcttctcaatgattttagacatttattcatgttaatttgtttgaagaccaagattatttgtggttatggtgcctatggacct |
9809593 |
T |
|
| Q |
101 |
gtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctgtaattttctcttcc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
9809592 |
gttgaagaagaagatagaggattgagaaagagagtccccgaaaattgaaggaaaaaaatgaataatacaaacttttctctctcctctaattttctcttcc |
9809493 |
T |
|
| Q |
201 |
cttttgtgtctcaacctttagatcaatccaagagtttagaatggtacaaaac--acaacattgttttaaaaggcacgaggggatcatttcctaagagcgg |
298 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
9809492 |
ctcttgtgtctcaacctttagatgaatctaagagtttagaattgtacaagacaaacaacattgttttaaaaggcatgaggggatcatttcctaagagtgg |
9809393 |
T |
|
| Q |
299 |
tacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9809392 |
tacaaaggtggtatgccacctaagcatgtccacctatcatcactc |
9809348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 50 - 343
Target Start/End: Complemental strand, 16248629 - 16248334
Alignment:
| Q |
50 |
ttattttgtttgaagactaagattatttgtg--gttatggtgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaatt |
146 |
Q |
| |
|
||||||||||||||||| |||||||| |||| | |||||| |||||||| ||||| ||||||||||| |||||||||||||| | || || |||||||| |
|
|
| T |
16248629 |
ttattttgtttgaagaccaagattatgtgtgtggctatggttcctatggaacctgttgaagaagaagagagaggattgagaaataaagcccacgaaaatt |
16248530 |
T |
|
| Q |
147 |
gaaggnnnnnnntgaataatacaaacttttatttctcctgtaattttctcttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggta |
246 |
Q |
| |
|
||||| |||||| |||||||||| | |||||| ||||||||||||||| | || |||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
16248529 |
gaagg--aaaaatgaataggacaaacttttctctctcctctaattttctcttccc-tctgcgtctcaacctttagatcaatccaacagtccagaatttca |
16248433 |
T |
|
| Q |
247 |
ca--aaacacaacattgttttaaaaggcacgaggggatcat-ttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
|| | |||||||| |||||||||| |||||||||| | |||||| | |||||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
16248432 |
caagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtggtacaaa-gtggtatgccacctaagtatgtttacctatcaccactc |
16248334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 97 - 343
Target Start/End: Complemental strand, 45623362 - 45623117
Alignment:
| Q |
97 |
acctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataatacaaacttttatttctcctgtaattttctc |
196 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| || || | ||||||||||| |||||| | | |||||| | ||||| |||||||||| |
|
|
| T |
45623362 |
acctgttgaagaagaagagagaggattgagaaagaaagcccacaaaaattgaaggaaaata-tgaataggatagacttttctctctcccctaattttctc |
45623264 |
T |
|
| Q |
197 |
ttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggtacaaaac--acaacattgttttaaaaggcacgaggggatcat-ttcctaag |
293 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| | |||||| | |||| || ||||||| | |||||| ||| ||| ||||||| | |||||| |
|
|
| T |
45623263 |
ttccctct-gtgtctcaacctttagatcaatccaaagatctagaattgcacaagacatacaacatgatattaaaa-gcaggagaggatcatatccctaag |
45623166 |
T |
|
| Q |
294 |
agcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
| |||||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
45623165 |
ggtggtacaaa-gtggtatgccacctaagtatgtatacctatcaccactc |
45623117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 69 - 343
Target Start/End: Complemental strand, 34578740 - 34578464
Alignment:
| Q |
69 |
agattatttgtggttatggtgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataata |
167 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||||||||||| || || ||||||||||||| |||||| | |
|
|
| T |
34578740 |
agattatttgtggctatagttcctatggaacctgttgaagaagaagagagaggattgagaaagaaagcccacgaaaattgaaggaaaata-tgaatagga |
34578642 |
T |
|
| Q |
168 |
caaacttttatttctcctgtaattttctcttccct-tttgtgtctcaacctttagatcaatccaagagtttagaatggtacaaaac--acaacattgttt |
264 |
Q |
| |
|
| |||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | |||| || ||||||| | | |
|
|
| T |
34578641 |
tagacttttctctctcccttaattttctcttccctctttgtgtctcaacctttagatcaatccaacagtctagaattgcacaagacatacaacatgatat |
34578542 |
T |
|
| Q |
265 |
taaaaggcacgaggggatcat-ttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
||||| ||| ||||||||||| | |||||| | |||||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
34578541 |
taaaa-gcaggaggggatcatatccctaagggtggtacaaa-gtggtatgccacctaagtatgtatacctatcaccactc |
34578464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 7934943 - 7935117
Alignment:
| Q |
69 |
agattatttgtggttatggtgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaattgaaggnnnnnnntgaataata |
167 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||||||||||| || || ||||||||||||| || ||| | |
|
|
| T |
7934943 |
agattatttgtggatatggttcctatggaacctgttgaagaagaagagagaggattgagaaagaaagcccacgaaaattgaagg-aaaatatgtatagga |
7935041 |
T |
|
| Q |
168 |
caaacttttatttctcctgtaattttctcttccct-tttgtgtctcaacctttagatcaatccaagagtttagaat |
242 |
Q |
| |
|
| |||||| | ||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
7935042 |
tagacttttctctctcccctaattttctcttccctctttgtgtctcaacctttagatcaatccaacagtctagaat |
7935117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 235 - 344
Target Start/End: Original strand, 52623568 - 52623679
Alignment:
| Q |
235 |
tttagaatggtacaaaaca--caacattgttttaaaaggcacgaggggatcatttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacc |
332 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52623568 |
tttagaattgtacaagacaaacaacattgttttaaaaggcaagaggggatcatttcctaagagtggtacaaaggtggtatgccacctaagcatgtccacc |
52623667 |
T |
|
| Q |
333 |
tatcatcactca |
344 |
Q |
| |
|
|||||||||||| |
|
|
| T |
52623668 |
tatcatcactca |
52623679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 54725462 - 54725508
Alignment:
| Q |
297 |
ggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
54725462 |
ggtacaaaggtggtatgccacctaaggatgtcaacctatcatcactc |
54725508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 50 - 343
Target Start/End: Original strand, 31888699 - 31888994
Alignment:
| Q |
50 |
ttattttgtttgaagactaagattatttgtg--gttatggtgcctatgga-cctgtcgaagaagaagatagaggattgagaaagagagtccgcgaaaatt |
146 |
Q |
| |
|
||||||| ||||||||| |||||||| |||| | |||||| |||||||| ||||| ||||||||||| |||||||||||||| | || || | |||||| |
|
|
| T |
31888699 |
ttattttttttgaagaccaagattatgtgtgtggctatggttcctatggaacctgttgaagaagaagagagaggattgagaaataaagcccactaaaatt |
31888798 |
T |
|
| Q |
147 |
gaaggnnnnnnntgaataatacaaacttttatttctcctgtaattttctcttcccttttgtgtctcaacctttagatcaatccaagagtttagaatggta |
246 |
Q |
| |
|
||||| |||||| |||||||||| | |||||| ||||||||||||||| | || |||||||||||||||||||||||| ||| ||||| | |
|
|
| T |
31888799 |
gaagg--aaaaatgaataggacaaacttttctctctcctctaattttctcttccc-tctgcgtctcaacctttagatcaatccaacagtccagaatttca |
31888895 |
T |
|
| Q |
247 |
ca--aaacacaacattgttttaaaaggcacgaggggatcat-ttcctaagagcggtacaaatgtggtatgccacctaagtatgtccacctatcatcactc |
343 |
Q |
| |
|
|| | |||||||| |||||||||| |||||||||| | |||||| | | |||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
31888896 |
caagacacacaacaggacattaaaaggcagtaggggatcatatccctaagggtgttacaaa-gtggtatgccacctaagtatgtttacctatcaccactc |
31888994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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