View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2659_low_4 (Length: 625)
Name: NF2659_low_4
Description: NF2659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2659_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Original strand, 4236055 - 4236677
Alignment:
| Q |
1 |
taatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgccggtgcatcgtttgtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4236055 |
taatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgctggtgcatcgtttgtt |
4236154 |
T |
|
| Q |
101 |
ccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaaaggagaagaccttgccatcacagatattttct |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
4236155 |
ccgtctccggttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaatggagaagatcttgccatcacagagattttct |
4236254 |
T |
|
| Q |
201 |
caactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgtttcatctgtgtcctgatttggttgaagaattccgcattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
4236255 |
caactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgtttcatccgtgtcctgattaggttgaagaattccacattc |
4236354 |
T |
|
| Q |
301 |
aaatgctatagcttttgcagtgaaaacattatcacctgtcatcagagataaagttagttaatagtcaattaagaattagt---------tattcttatta |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||| || |||| ||||||||||| |
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| T |
4236355 |
aaatgctatagcttttgcagtgaaaacattgtcacctgtcatcagagataaagtatgttaatggttaattaacaactagttaggttaactattcttatta |
4236454 |
T |
|
| Q |
392 |
tcttcttcgtattcatatagactcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaatacctgtaatcatttt |
491 |
Q |
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| ||| || | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4236455 |
tattcatcatttccatataggctcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttagtaatacctgtaatcatttt |
4236554 |
T |
|
| Q |
492 |
gacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaatgttaaaccattg |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4236555 |
gacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcctaacaatgttaaaccattg |
4236654 |
T |
|
| Q |
592 |
tcttttaccaccatcttgttcat |
614 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
4236655 |
tcttttaccaccatcttgttcat |
4236677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 30441396 - 30441333
Alignment:
| Q |
21 |
tctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgc |
84 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |||| ||||||| |||||||| ||||||| |
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|
| T |
30441396 |
tctcttttgcaacttcggtaccttgaattcccatggaaattccaataccagcttctatcaatgc |
30441333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 482
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
443 |
atcaagttatcgataaataagatattttagtaatacctgt |
482 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 482
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
444 |
tcaagttatcgataaataagatattttagtaatacctgt |
482 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 6185179 - 6185515
Alignment:
| Q |
1 |
taatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgccggtgcatcgtttgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
6185179 |
taatataacaatatctgaactctcttttgcaacttcagtaccttgaattcccattgaaagtccgatatcggcttctttcaatgccggtgcatcgtttgtt |
6185278 |
T |
|
| Q |
101 |
ccatctccagttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttatcaaaaggagaagaccttgccatcacagatattttct |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||||||| ||||||| | |
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|
| T |
6185279 |
ccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgtcaaatggagatgatcttgccatcacacatatttttt |
6185378 |
T |
|
| Q |
201 |
caactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgtttcatctgtgtcctgatttggttgaagaattccgcattc |
300 |
Q |
| |
|
|||| || | || ||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| |
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|
| T |
6185379 |
caaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgtttcatctatgtcctgattaggttgaagaattccacattc |
6185478 |
T |
|
| Q |
301 |
aaatgctatagcttttgcagtgaaaacattatcacct |
337 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |
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|
| T |
6185479 |
aaatgctatagctttcgcagtgaaaacattgtcacct |
6185515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 455 - 609
Target Start/End: Original strand, 6185611 - 6185765
Alignment:
| Q |
455 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatc |
554 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||| |
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|
| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
|
| Q |
555 |
cttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttg |
609 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttg |
6185765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 38357009 - 38357160
Alignment:
| Q |
11 |
atatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgccggtgcatcgtttgttccatctccag |
110 |
Q |
| |
|
||||| ||||| ||||| || ||||| || ||||| |||||||| |||||||| |||||||||||||| || || |||||||||||||| || || || | |
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|
| T |
38357009 |
atatcggaactttctttggcgacttcggttccttggattcccatagaaagtcctatatcagcttcttttaaggcaggtgcatcgtttgtgccgtcgcctg |
38357108 |
T |
|
| Q |
111 |
ttacagcaactacatgacctttttgttttaagcattgtaccattagaagttt |
162 |
Q |
| |
|
| || ||||||||||||||||| | | |||||||||| ||||| | |||||| |
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|
| T |
38357109 |
tgaccgcaactacatgacctttctttcttaagcattgcaccatcaaaagttt |
38357160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 19592938 - 19593039
Alignment:
| Q |
1 |
taatataacaatatctgaactctcttttgctacttcagtaccttgaattcccattgaaagtccaatatcagcttctttcaatgccggtgcatcgtttgtt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| |||||| |||||| ||||||||||| ||| | |||||| ||| || |
|
|
| T |
19592938 |
taatataacaatatctgagctctcttttgcaacttcggtaccttgaatttccatggaaagttcaatattagcttctttcagtgctgatgcatcatttctt |
19593037 |
T |
|
| Q |
101 |
cc |
102 |
Q |
| |
|
|| |
|
|
| T |
19593038 |
cc |
19593039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
443 |
atcaagttatcgataaataagatattttagtaatacctgt |
482 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 431
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
369 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
431 |
Q |
| |
|
||||||||||||||| ||| ||||| | ||| | ||||||| ||||| ||||||||||||||| |
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|
| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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