View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_1 (Length: 984)
Name: NF2660_high_1
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 891; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 891; E-Value: 0
Query Start/End: Original strand, 9 - 953
Target Start/End: Original strand, 29940618 - 29941563
Alignment:
| Q |
9 |
gaagaaaataatttggtcaggaaaaggatacattgtgtgaacataatgcaaaaattgatatgcagtagtactagttgttattaacacggctagaacaact |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29940618 |
gaagaaaataatttggtcaggaaaaggatacattgtgtgaacataaaacaaaaattgatatgcagtagtactagttgttattaacacggctagaacaact |
29940717 |
T |
|
| Q |
109 |
taaattctatgtatatatagaaggttttagtccaaagtatattaatgttaaactgaatatgagagcatatatagataggaacataaaaatgtcagtacta |
208 |
Q |
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| T |
29940718 |
taaattctatgtatatatagaaggttttagtccaaagtatattaatgtcaaactgaatatgagagcatatatagataggaacataaaaatgtcagtacta |
29940817 |
T |
|
| Q |
209 |
gttagtagtgcagcacaagaaaagcaaaataaaataccttaagaacatcttgctgaggtgaagaagataacacagaagagagaagctcagtgctatttct |
308 |
Q |
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| T |
29940818 |
gttagtagtgcagcacaagaaaagcaaaataaaataccttaagaacattttgctgaggtgaagaagataacacagaagagagaagctcagtgctatttct |
29940917 |
T |
|
| Q |
309 |
tgcaacatcaaaagcttcctttgtttgttcaggcttgagactcggcacaggattttcacgctgaataagatgtgcaagactgcgatcaggctgagtatcg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29940918 |
tgcaacatcaaaagcttcctttgtttgttcaggcttgagactcggcacaggattttcacgctgaataagatgtgcaagactgcgatcaagctgagtatcg |
29941017 |
T |
|
| Q |
409 |
tgctgaataagatgtccaagactgtgatcaatctctggtgcagagggagcgtgataatgagttaaaataggagccgagctttcattgttacgaccaggga |
508 |
Q |
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| T |
29941018 |
tgctgaataagatgtccaagactgtgatcaatctctggtgcagagggagcgtgataatgagttaaaataggagccgagctttcattgttacgaccaggga |
29941117 |
T |
|
| Q |
509 |
accgaatgccccttgatttcaaactctgcaacagaaaatgtatataaaaccattcatactctggagttggttcatg-aaatcaaagtttctatgaccaag |
607 |
Q |
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| T |
29941118 |
accgaatgccccttgatttcaaactctgcaacagaaaatgtatataaaaccattcatactctggagttggttcatgaaaatcaaagtttctatgaccaag |
29941217 |
T |
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| Q |
608 |
taatatggaaaacgattaatgttgcttcccccgtctttatccacatcttatagcttaagttcagacattagttcataacaaaaagtgaaagaatttcaga |
707 |
Q |
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| T |
29941218 |
taatatggaaaacgattaatgttgctt-ccctgtctttatccacatcttatagcttaagttcagacattagttcataacaaaaagtgaaagaatttcaga |
29941316 |
T |
|
| Q |
708 |
aac-aaggatatcacactacttcaactgttatcaaattcatgaattccattcagatgaacagtatattaaccagaaatttgtgtaaatatttcaacttat |
806 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29941317 |
aacaaaagatatcacactacttcaactgttatcaaattcatgaattccattcagatgaacagtatattaaccagaaatttgtgtaaatatatcaacttat |
29941416 |
T |
|
| Q |
807 |
taagattgattataacttctgtagcgtttgtaaaatgattattaagtgatcactttgataatgtaaaatttcccttctccaatttttaaaataaaacttt |
906 |
Q |
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| T |
29941417 |
taagattgattataacttctgtagcgtttgtaaaatgattattaagtgatcactttgataatgtaaaatttcccttctccaatttttaaaataaaacttt |
29941516 |
T |
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| Q |
907 |
gggggcatttgaggaaagagcataattaagtgtctcaataaaaacta |
953 |
Q |
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| T |
29941517 |
gggggcatttgaggaaagagcataattaagtgtctcaataaaaacta |
29941563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 1375471 - 1375557
Alignment:
| Q |
252 |
aacatcttgctgaggtgaagaagataacacagaagagagaagctcagtgctatttcttgcaacatcaaaagcttcctttgtttgttc |
338 |
Q |
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| T |
1375471 |
aacatcttgttgtggtgaagatgataacacagtagaaagaagctcgatgctatttctcgcaatatcaaaggcttcctttgtctgttc |
1375557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 1375650 - 1375722
Alignment:
| Q |
467 |
gagttaaaataggagccgagctttcattgttacgaccagggaaccgaatgccccttgatttcaaactctgcaa |
539 |
Q |
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|||| ||||| |||||| |||||||||| | ||||||||| |||| ||| ||||||||| ||||||||||||| |
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| T |
1375650 |
gagtgaaaatcggagccaagctttcattatcacgaccaggaaacctaataccccttgatctcaaactctgcaa |
1375722 |
T |
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