View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_11 (Length: 550)
Name: NF2660_high_11
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Complemental strand, 3366156 - 3365627
Alignment:
| Q |
7 |
caagaatatatacacagattattgactctcaaacgagaaactaaggcttctgtcaaatataaataactaaaacaattttatagaaacatcaagacattag |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
3366156 |
caagaaaatatacacagattattgactctcaaacgagaaactaaggcttctgtcaaatataaataactaaaacaattatatagaaacatcacgacattag |
3366057 |
T |
|
| Q |
107 |
catgagaccagttttgattgttctcagaaaaggaaccaaagctgtaatcatgttcatttcactagataagaactcaggtgattatttcctatatcaaaat |
206 |
Q |
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| T |
3366056 |
catgagaccagttttgattgttctcagaaaaggaaccaaagctgtaatcatgttcatttcactagataagaactcaggtgattatttcctatatcaaaat |
3365957 |
T |
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| Q |
207 |
actgattttttccgccttagaccatataccagtatgccccttgctaagaaacttaaggtcactataatcaacaaagtcaagtaatcaatgcgtatatgaa |
306 |
Q |
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| T |
3365956 |
actgattttttccgccttagaccatataccagtatgccccttgctaagaaacttaaggtcactataatcaacaaagtcaagtaatcaatgcgtatatgaa |
3365857 |
T |
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| Q |
307 |
agactagtttttatacctctgtgaagctaaatatacaccttgattcttgatcgcnnnnnnnnccaacagcactttaaaaatattatttttaccaaatatc |
406 |
Q |
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| T |
3365856 |
agactagtttttatacctctgtgaagctaaatatgcaccttgattcttgatcgcttttttttccaacaacactttaaaaatattatttttaccaaatatc |
3365757 |
T |
|
| Q |
407 |
aaactatgcaccttgattcatgatcccttacttccccagtgacactaataatattacgtttgctaaatctcaagaataccctgtagttgtgcaaaaattt |
506 |
Q |
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| T |
3365756 |
aaactatgcaccttgattcatgatcccttacttccccagtgacactaataatattacgtttggcaaatctcaagaataccctgcagttgtgcaaaaattt |
3365657 |
T |
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| Q |
507 |
taaatgacaaaattactttggttcttactg |
536 |
Q |
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| T |
3365656 |
taaatgacaaaattactttggttcttactg |
3365627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 26067397 - 26067463
Alignment:
| Q |
117 |
gttttgattgttctcagaaaaggaaccaaagctgtaatcatgttcatttcactagataagaactcag |
183 |
Q |
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| T |
26067397 |
gttttaattgttctcagaaaagaaacagaagctgtaatcgtctccatttcacaagatatgaactcag |
26067463 |
T |
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