View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2660_high_12 (Length: 530)

Name: NF2660_high_12
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2660_high_12
NF2660_high_12
[»] chr8 (3 HSPs)
chr8 (229-512)||(1182618-1182906)
chr8 (42-228)||(1183160-1183342)
chr8 (1-40)||(1183580-1183619)
[»] chr4 (2 HSPs)
chr4 (229-473)||(26076108-26076352)
chr4 (169-221)||(5706782-5706834)
[»] chr1 (1 HSPs)
chr1 (244-473)||(4958602-4958831)
[»] chr2 (1 HSPs)
chr2 (229-469)||(12370527-12370767)
[»] chr7 (2 HSPs)
chr7 (229-474)||(5242921-5243161)
chr7 (42-127)||(5243516-5243601)
[»] chr3 (3 HSPs)
chr3 (229-473)||(32368621-32368865)
chr3 (169-221)||(18641439-18641491)
chr3 (67-112)||(32368156-32368201)
[»] chr6 (1 HSPs)
chr6 (249-316)||(9636620-9636687)
[»] chr5 (1 HSPs)
chr5 (220-281)||(33717078-33717140)


Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 229 - 512
Target Start/End: Complemental strand, 1182906 - 1182618
Alignment:
Q  229 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 328  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1182906 agatgagatttcctaggatcattcatgtatctactgatgatacttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaacta 1182807  T
Q  329 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182806 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 1182707  T
Q  429 atcaaacttttctagcagttcaccaatgtacttctgatgatgca-----tttcccatcttgctagctttaaactccattcctcagaaat 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||| ||||||    
T  1182706 atcaaacttttctagcagttcaccaatgtacttctgatgatgcataacctttcccatcttgctagctttaaactccattcctaagaaat 1182618  T

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Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 1183342 - 1183160
Alignment:
Q  42 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatttgtttgtt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  1183342 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatt----tgtt 1183247  T
Q  142 attaaatttcagcttcaaaggattttccacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 228  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1183246 attaaatttcagcttcaaaggattttctacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 1183160  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1183619 - 1183580
Alignment:
Q  1 agtgttagaagtttgttatggttttcattaattaatgaaa 40  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1183619 agtgtttgaagtttgttatggttttcattaattaatgaaa 1183580  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 229 - 473
Target Start/End: Complemental strand, 26076352 - 26076108
Alignment:
Q  229 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 328  Q
    |||||||| || || |||||||||||| |||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| ||||    
T  26076352 agatgagacttccttggatcattcatgaatctactgattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccacta 26076253  T
Q  329 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 428  Q
    || |||||||||  ||||  ||  | || |||||||| ||||||||||| || ||||||||||||||||| |||||||   || | ||||||||  ||||    
T  26076252 tctgtttgaattcagtagactccgccttttcttcattactacattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcat 26076153  T
Q  429 atcaaacttttctagcagttcaccaatgtacttctgatgatgcat 473  Q
     | |||  |||| |||||||| |||||||||||||| ||||||||    
T  26076152 ttgaaatctttcaagcagttctccaatgtacttctgttgatgcat 26076108  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 5706834 - 5706782
Alignment:
Q  169 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 221  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  5706834 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 5706782  T

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Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 473
Target Start/End: Original strand, 4958602 - 4958831
Alignment:
Q  244 ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg 343  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||| ||||||| ||||||||  ||||| |||||| |||||||||  |    
T  4958602 ggatcattcatgaatctactgatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttag 4958701  T
Q  344 tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctag 443  Q
    |||  || || || |||||||| || |||||||| || ||||||||||||||||| |||||||   || | ||||||||  |||| | |||  |||| ||    
T  4958702 tagactccaccttttcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatatttcaag 4958801  T
Q  444 cagttcaccaatgtacttctgatgatgcat 473  Q
    |||||| |||||||||||||| ||||||||    
T  4958802 cagttctccaatgtacttctgctgatgcat 4958831  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 229 - 469
Target Start/End: Complemental strand, 12370767 - 12370527
Alignment:
Q  229 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 328  Q
    |||||||| || || |||||||||||| |||||||| |||||||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||    
T  12370767 agatgagacttccttggatcattcatgcatctactgatgatacttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccacta 12370668  T
Q  329 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 428  Q
    |  |||||||||  ||||  || || || |||||||| || |||||||| || ||||||||||||||||| |||||||   || | ||||||||  ||||    
T  12370667 tatgtttgaattcagtagactccaccttttcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcat 12370568  T
Q  429 atcaaacttttctagcagttcaccaatgtacttctgatgat 469  Q
     | |||  |||| |||||||  |||||||||||||| ||||    
T  12370567 ttgaaatctttcaagcagttatccaatgtacttctgctgat 12370527  T

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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 229 - 474
Target Start/End: Complemental strand, 5243161 - 5242921
Alignment:
Q  229 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 328  Q
    |||||||| || || |||||||||||| |||| ||  |||||||||| |||||||||||||| |||||  |||| |||| ||||||||  | ||| | ||    
T  5243161 agatgagacttccttggatcattcatgaatcttctaatgatacttactgcaaagcatatatctggtctactattacataagtatctcatgg-tcctatta 5243063  T
Q  329 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 428  Q
    || |  ||||||  |||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||  ||||||| ||||||  |||    
T  5243062 tctgcatgaattcagtaggttctactttctcttcattgatgcattcatctagcttagcatttgtttcagaaggattagttgcagtgttacaatctaccat 5242963  T
Q  429 atcaaacttttctagcagttcaccaatgtacttctgatgatgcatt 474  Q
    ||||||    || |||||||| ||||| ||||| || |||||||||    
T  5242962 atcaaa----tcaagcagttccccaatatacttttgttgatgcatt 5242921  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 5243601 - 5243516
Alignment:
Q  42 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatag 127  Q
    ||||||||||||| | |||||||  ||||||||||||| |||||| || || ||||||| |||  |||| ||||||| ||| ||||    
T  5243601 tgtcacttgttcccttatgaaatgaaacctagtttcaatgtgttttctcctaccatgtgttattagattgttagctaaatttatag 5243516  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 229 - 473
Target Start/End: Original strand, 32368621 - 32368865
Alignment:
Q  229 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 328  Q
    ||||||||||| || |||||||||||| | |||| | |||||||||| |||||| ||||||| ||| |||| ||||||| |||  |||  ||||| ||||    
T  32368621 agatgagatttccttggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccacta 32368720  T
Q  329 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 428  Q
    || |||||||||  |||| || |||| | ||||||||  |||| ||||||| |||||||||||||||||| ||||| |   || ||||||| ||  ||||    
T  32368721 tctgtttgaattcagtaggttttactctttcttcattagtacactcatccaacttagcatttgtttcagatggattcgatgcaatgttgcagtcaatcat 32368820  T
Q  429 atcaaacttttctagcagttcaccaatgtacttctgatgatgcat 473  Q
     | |||| |||| |||||||| ||||||||||| || ||||||||    
T  32368821 ttgaaacctttcaagcagttccccaatgtacttttgttgatgcat 32368865  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Original strand, 18641439 - 18641491
Alignment:
Q  169 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 221  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  18641439 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 18641491  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 32368156 - 32368201
Alignment:
Q  67 aacctagtttcaacgtgtttacttcttccatgtgctataggattct 112  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||    
T  32368156 aacctagtttcaatgtgtttactcctgccatgtgctattggattct 32368201  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 9636687 - 9636620
Alignment:
Q  249 attcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctca 316  Q
    |||||||||||||||| |||  ||||   |||||||||| ||||||||| ||||||||| ||||||||    
T  9636687 attcatgtatctactggtgaagcttatttcaaagcatatgtcaggtctggtattgcataagtatctca 9636620  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 33717078 - 33717140
Alignment:
Q  220 agctgcaa-aagatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaa 281  Q
    |||||||| ||||| ||||||||  |||||||||||||||||| || |||||||||| |||||    
T  33717078 agctgcaataagattagattttcacggatcattcatgtatctattgatgatacttactgcaaa 33717140  T

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