View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_18 (Length: 338)
Name: NF2660_high_18
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 31379601 - 31379281
Alignment:
| Q |
18 |
agaatgttccttaattggttaagcagatgcaacaacttcgtctgaagtcggaagtgcttcgctc---tctgtagcgttgatctcctcttgcaacagctcg |
114 |
Q |
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| T |
31379601 |
agaatgttccttaattggttaagcagatgcaacaacttcgtctgaagtcggaagtgcttcgctcgtctctgtagcgttgatctcctctagcaacagcttg |
31379502 |
T |
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| Q |
115 |
agaatcctggcacacgactctcggatttctcatggataatcatacatacacgagttttgttaacggttcgagtcagccatggaatcaagatctccaaaaa |
214 |
Q |
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| T |
31379501 |
agaatcctggcacaggactctcgtatttcttgtggataatcatacatacgcaagttttgttaacggttcgagtcagccatggaatcaagatccccaacaa |
31379402 |
T |
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| Q |
215 |
caggcgaagaaga------atcaacgctatcaccttgctgcaactgttgtggttcaaactccaaatgtcaccaatgtcacaaattctatgtca-ccaagt |
307 |
Q |
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| T |
31379401 |
caggcgaaaaagaatgttcatcaacgctatcaccttgctgcaactgttgtggttcaaactccaaatgtcaccaatgtcacaaattctatgtcacccaagt |
31379302 |
T |
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| Q |
308 |
gctacccaaatcttcttcatc |
328 |
Q |
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| T |
31379301 |
gctacccaaatcttcttcatc |
31379281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 5467776 - 5467821
Alignment:
| Q |
98 |
cctcttgcaacagctcgagaatcctggcacacgactctcggatttc |
143 |
Q |
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| T |
5467776 |
cctcttgcaacagctcgagaattcttgcatacgactctcgaatttc |
5467821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 1880272 - 1880228
Alignment:
| Q |
272 |
aatgtcaccaatgtcacaaattctatgtca-ccaagtgctaccca |
315 |
Q |
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| T |
1880272 |
aatgtcaccagtgtcaccaattctatgtcacccaagtgctaccca |
1880228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 21904060 - 21904008
Alignment:
| Q |
93 |
gatctcctcttgcaacagctcgagaatcctggcacacgactctcggatttctc |
145 |
Q |
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| T |
21904060 |
gatctcctcttgcaacaactcgagaatacttgcgcacgactgtcgaatttctc |
21904008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 52298639 - 52298679
Alignment:
| Q |
278 |
accaatgtcacaaattctatgtca-ccaagtgctacccaaa |
317 |
Q |
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| T |
52298639 |
accaatgtcacaaattctatatcacccaagtgctacccaaa |
52298679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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