View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_22 (Length: 304)
Name: NF2660_high_22
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 8191453 - 8191233
Alignment:
| Q |
10 |
attattctgtctttcaataattgtttctaattacaagccctattccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactc |
109 |
Q |
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| T |
8191453 |
attattctgtctttcaataattgtttctaattacaagccctattccctttacagacttttcaaaataaaatattagcacatgctgtaaaagagagcactc |
8191354 |
T |
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| Q |
110 |
ttgacagtctcattaccgagcttcttctgtggctcttggatgataatgttccacgtatggatgatggaagccaggtgttgaaagctttgaatgtattgat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8191353 |
ttgacagtctcattaccgagcttcttctgtggctcttggatgataatgttccacgtatggatgatggaagccagttgttgaaagctttgaatgtattgat |
8191254 |
T |
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| Q |
210 |
tcttaagattctggtaagaga |
230 |
Q |
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| T |
8191253 |
tcttaagattctggtaagaga |
8191233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 42349220 - 42349044
Alignment:
| Q |
54 |
ccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgacagtctcattaccgagcttcttctgtggctcttggatgat |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| |
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| T |
42349220 |
ccctttacagacttttcaaaataaaagattagcacatgctgtaaaagagagcactcttgatagcctcattacagagcttcttctgtggctcttggatgat |
42349121 |
T |
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| Q |
154 |
aatgttccacgtatggatgatggaagccaggtgttgaaagctttgaatgtattgattcttaagattctggtaagaga |
230 |
Q |
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||||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
42349120 |
aatgttccacgcatggatgatggaagccagttgttgaaagcattgaatgtattgatgcttaagattctggtaagaga |
42349044 |
T |
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