View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2660_high_24 (Length: 303)
Name: NF2660_high_24
Description: NF2660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2660_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 49581593 - 49581874
Alignment:
| Q |
1 |
cgttttctttattttcaatctacaacttacagatcggtgtataaccatcatgatccgtttttgcagcttcatgcgggtctcccgtgggtcttcttctcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49581593 |
cgttttctttattttcaatctacaacttacagatcggtgtattaccatcatgatccgtttttgcagcttcatgcgggtctcccctgggtcttcttctcct |
49581692 |
T |
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| Q |
101 |
tcttctgcttccatggaggtaactaactaacactannnnnnnnnnnnnnnnaattcattttattttctctcgtgctttgcttgtcgtacacttttaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49581693 |
tcttctgcttccatggaggtaactaactaacactatttttttttta-----aattcattttattttctctcgtgctttgcttgtcgtacacttttaatgt |
49581787 |
T |
|
| Q |
201 |
actctaatatatattttcatacaaaataactcgaattattgtaaatcattagtgtaaaaatctgttgtttgtgttttttagtttcat |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49581788 |
actctaatatatattttcatacaaaataactcgaattattgtaaatcattagtgtaaaaatctgttgtttgtgttttttagtttcat |
49581874 |
T |
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